| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1789 |
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| Symbol | pdxH |
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| ID | 5713358 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | - |
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| Start bp | 1860527 |
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| End bp | 1861132 |
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| Gene Length | 606 bp |
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| Protein Length | 201 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 641267709 |
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| Product | pyridoxamine 5'-phosphate oxidase |
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| Protein accession | YP_001533132 |
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| Protein GI | 159044338 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0259] Pyridoxamine-phosphate oxidase |
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| TIGRFAM ID | [TIGR00558] pyridoxamine-phosphate oxidase |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.00011634 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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| |
Fosmid Coverage information |
| Num covering fosmid clones | 39 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGCAGAGA GATCCGGCAA ATTCGCGGGC GACAACCCGT TCGACATCAC CCGCGCGTGG
TTGGCAGAGG CCGAGGCCTC CGAGCCGAAC GATCCCAACG CGATGGCGCT GTCGACCGTG
GACGCGGACG GGCTGCCCAA TGTGCGCATG GTCCTGCTCA AGGAGATCGA AGACGACGCC
TTCGTGTTCT ACACCAATTA CGGCTCCGCC AAGGCGGCCG AACTGGACCA GGCCGGCAAG
GCCGCGGTCG TGTTTCACTG GAAATCCCTG CGCCGGCAGA TCCGCGTGCG CGGCCATGTC
AGCCGCGAGG ACGGGCCGAA GGCGGATGCC TATTACAAGT CGCGCTCCCT CCAGAGCCGG
ATCGGCGCCT GGGCGTCGGA GCAATCCCGC CCCCTCGAAA GCCGCGCGGC ACTGATGGCG
CGTGTGGCGA AACTCGGTCT CGAAAAGGGG CTCAATCCGG ACCGCCCTCC CTTTTGGGGG
GGCTATCGCC TGCGTCCGGT GGAAATGGAA TTCTGGGCGG ATGGTGATTT TCGCCTGCAC
GACCGCTATC GGTGGACTCG TGCCGACGGG GAAAGCGATT GGAAAATCAG CCGCTTGAAC
CCTTGA
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| Protein sequence | MAERSGKFAG DNPFDITRAW LAEAEASEPN DPNAMALSTV DADGLPNVRM VLLKEIEDDA
FVFYTNYGSA KAAELDQAGK AAVVFHWKSL RRQIRVRGHV SREDGPKADA YYKSRSLQSR
IGAWASEQSR PLESRAALMA RVAKLGLEKG LNPDRPPFWG GYRLRPVEME FWADGDFRLH
DRYRWTRADG ESDWKISRLN P
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