| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1769 |
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| Symbol | edd |
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| ID | 5713336 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | - |
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| Start bp | 1835700 |
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| End bp | 1837505 |
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| Gene Length | 1806 bp |
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| Protein Length | 601 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 641267687 |
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| Product | phosphogluconate dehydratase |
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| Protein accession | YP_001533112 |
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| Protein GI | 159044318 |
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| COG category | [E] Amino acid transport and metabolism
[G] Carbohydrate transport and metabolism |
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| COG ID | [COG0129] Dihydroxyacid dehydratase/phosphogluconate dehydratase |
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| TIGRFAM ID | [TIGR01196] 6-phosphogluconate dehydratase |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 0.618197 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 42 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCACTCA ATCGCGTCAT TTCCGACGTC ACGGCCAGAA TCGAAGCCCG CAGCGCGGAA
GCGCGCAGCA CCTATCTCGA CCGGATGCGG CGCGCTGCCG AGGATGGGCC ACGGCGTGCG
CACCTGTCCT GCGGCAACCA GGCCCATGCC TATGCGGCGA TGGGGGGCGA CAAGGAGGCC
CTCGTGGCCG AGCGGAGCGC CAATATCGGT ATCGTCACCG CCTATAACGA CATGTTGAGC
GCGCATCAGC CGTTCAAGGA TTACCCCGAC AAGATCAAGG AGGCCGCCCG GCGCGCAGGC
GCCACGGCCC AGGTCGCGGG CGGGGTTCCG GCGATGTGCG ACGGGGTCAC GCAAGGTCAG
GTCGGCATGG AGCTGAGCCT GTTCTCGCGG GACGTGATCG CCCTGGCCAC TGGCGTGGCG
CTGAGCCACA ACACGTTCGA TGCCGCGGCC TATCTGGGCG TGTGCGACAA GATCGTGCCG
GGGCTGGTGA TTGCCGCCGC CACCTTCGGC TACCTGCCCG GCGTGTTCGT GCCTGCCGGG
CCCATGGTCA GCGGCTTGCC CAACGACCAG AAGGCCAAGG TGCGCCAGCA GTTCGCCGCC
GGGGAGATCG GGCGTGACAA GCTGATGGAG GCGGAAATGG CCTCCTATCA CGGGCCGGGA
ACCTGCACCT TTTACGGGAC GGCGAATTCC AACCAGATGC TGATGGAATT CATGGGGCTG
CACCTGCCAG GTGCGTCCTT CGTCAACCCG GGCACGCCCC TGCGCGAGGC GCTGACCGCG
GCGGCGGCGG AACGCCTGGC GGCGATCACG CAGCTCGGCA ACGAGTATCG CCCGGTCTGC
GATATCCTGG ATGCCAAGGC TTTCGTGAAC GGGATCGTCG GGCTGATGGC CACGGGCGGG
TCCACGAACC TGGTGATTCA CCTGCCCGCC ATGGCGCGGG CGGCGGGTGT GATCCTGGAC
CTGCAGGATT TCGCGGATAT TTCGGAGGCG ACGCCGTTGA TGGCGCGGGT CTATCCCAAC
GGGCTGGCGG ATGTGAACCA TTTCCATGCG GCGGGGGGTC TGGCCTACAT GATCGGGGAG
CTCCTGTCCG AGGGGCTGCT GCATCCCGAC ACCAAGACGA TCGCGGGCGA CGGTCTGGCC
GATTATGCCC GCGAGCCCAA GCTGATCGAC GGTGTGCTGC GCTGGGAAGA CGGGCCGCGC
CGGAGCCTGA ATGCCAAGAT CCTGCGCCCG GCATCGGACG GCTTTGCGCC GTCTGGTGGG
CTGAAAGAGC TCAAGGGCAA TCTCGGGCGC GGCGTGATGA AGGTGTCCGC CGTGGCACCG
GAGCGCCATG TGATCGAGGC CAGGGCGCGG GTCTTCGAGG ATCAGGGTGC CGTGAAGGAC
GCCTTCAAGG CGGGCGAGTT CACCGAGGAC ACGGTGGTCA TCGTGCGGTT CCAGGGGCCC
AAAGCGAACG GGATGCCGGA ATTGCATGCG CTGACGCCGG TTCTGGCGGT GCTGCAAGAT
CGCGGACTGA AGGTGGCGCT GGTGACGGAT GGGCGCATGT CGGGCGCGTC GGGCAAGGTG
CCCGCGGCGA TCCACGTGGC GCCCGAGGCG CTGGATGGCG GGCTGATGGC CAAGGTGCGG
ACCGGCGATC TGGTACGCGT GGATGCGGTG GCGGGCGTTC TGGAGGTGCT GGAGCCGGGG
GTCGAGGACC GTGCCCCGGC CATGCCGGAT CTGAGCGGCA ACAGTCACGG CATCGGGCGC
GAGTTGTTCG ACGTGTTCCG CACGACTGTC GGCCCGGCCA GCACCGGCGC TGGCGTGGTG
GTATAA
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| Protein sequence | MALNRVISDV TARIEARSAE ARSTYLDRMR RAAEDGPRRA HLSCGNQAHA YAAMGGDKEA
LVAERSANIG IVTAYNDMLS AHQPFKDYPD KIKEAARRAG ATAQVAGGVP AMCDGVTQGQ
VGMELSLFSR DVIALATGVA LSHNTFDAAA YLGVCDKIVP GLVIAAATFG YLPGVFVPAG
PMVSGLPNDQ KAKVRQQFAA GEIGRDKLME AEMASYHGPG TCTFYGTANS NQMLMEFMGL
HLPGASFVNP GTPLREALTA AAAERLAAIT QLGNEYRPVC DILDAKAFVN GIVGLMATGG
STNLVIHLPA MARAAGVILD LQDFADISEA TPLMARVYPN GLADVNHFHA AGGLAYMIGE
LLSEGLLHPD TKTIAGDGLA DYAREPKLID GVLRWEDGPR RSLNAKILRP ASDGFAPSGG
LKELKGNLGR GVMKVSAVAP ERHVIEARAR VFEDQGAVKD AFKAGEFTED TVVIVRFQGP
KANGMPELHA LTPVLAVLQD RGLKVALVTD GRMSGASGKV PAAIHVAPEA LDGGLMAKVR
TGDLVRVDAV AGVLEVLEPG VEDRAPAMPD LSGNSHGIGR ELFDVFRTTV GPASTGAGVV
V
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