| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1696 |
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| Symbol | |
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| ID | 5713262 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | - |
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| Start bp | 1764892 |
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| End bp | 1766529 |
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| Gene Length | 1638 bp |
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| Protein Length | 545 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 641267613 |
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| Product | putative alpha-isopropylmalate/homocitrate synthase family transferase |
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| Protein accession | YP_001533039 |
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| Protein GI | 159044245 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0119] Isopropylmalate/homocitrate/citramalate synthases |
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| TIGRFAM ID | [TIGR00977] 2-isopropylmalate synthase/homocitrate synthase family protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 0.683732 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 0.0200577 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACGAAC GCCTCTACCT CTACGACACC ACCTTGCGCG ACGGGCAGCA GACCCAGGGC
GTGCAGTTCT CGACCCCCGA GAAGCAGCAG ATCGCGGCGG CGCTGGATGC GTTGGGGATC
GACTTTATCG AGGGCGGCTG GCCCGGGGCG AACCCGACGG ATAGCGAGTT TTTTGCTTCT
GCGCCGACCT TTGATCATGC GCGGTTTGCG GCCTTCGGCA TGACCAAGCG CGCCGGGTTC
TCGGCGGAGA ATGACGATGT GCTGGCTGCG GTGCTGAATG CGGGCACGCA GGCCGTGTGC
CTTGTGGGCA AGTCGCATGA GTACCACGTG ACCCGTGCGC TTGGGATTTC GCTGGCCGAG
AACACCGAGA ACATCGCGCG CTCGGTTGCG CATCTGGTGG CGCAGGGGCG CGAGGCTATT
TTTGATGCGG AGCATTTCTT CGACGGCTAT CTCGCGAACC CGGGCTATGC GGTGGAGACG
TTGCAGGCCG CGCTGGAGGC CGGGGCGCGT TGGGTCGTGC TCTGCGACAC AAATGGCGGG
CGGCTCCCGG CGGAGGTGGG CCGGATTACG GCGGAGGTGA TCGCGGCGGG CGTGCCTGGG
GACCGGTTGG GTATTCACAC CCATAACGAC ACCGGCAATG CGGTGGCCAA TGCACTTGCC
GCGATCGACG CGGGCGCGCG GCAGGTGCAG GGCACGCTGA ACGGGCTGGG CGAGCGGTGC
GGCAATGCCA ATCTGGTCAC GCTGATCCCG ACGCTGTTGT TGAAGGAGCC TTATGCCAGC
CGGTTCGAGA CCGGGGTGAG TGCCGCGGCG CTGCGGGACC TGGTGCGGGT GTCGCGGACG
CTTGACGATA TTCTCAACCG GGTGCCGACC AAGAGCGCGC CCTATGTGGG CGCGTCGGCG
TTTGCGCACA AGGCGGGCCT GCATGCCTCG GCGATCCTGA AGGACCCCAG CACTTACGAG
CATATCCCGC CGGAGGCGGT GGGCAATGCG CGGGTCATTC CGATGTCGAA CCAGGCCGGG
CAGTCGAACC TGCGCAAGCG TCTGGCCGAT GCGGGGATCG CCGTACAGAA GGGGGATATG
CGGCTCGGGG CGCTTCTGGA CGAGGTAAAG CGGCGGGAGG ATATGGGATA TTCCTTCGAC
AGTGCGCAGG CGTCGTTTGA ACTGCTCGCG CGGCGGCATC TGGAGGGGCT GCCGGAGTTC
TTCGAGGTCA AGCGCTACAG GGTGACGGTG GAGCGGCGCA AGAACAAGTA CGACCGGATG
GTCAGCCTCT CGGAGGCGGT GGTGGTCCTG AAGATCGGGG ATGAGAAGAT GCTGTCGGTG
TCGGAGTCCA TGGACGAGAC CGGCTGCGAC CGGGGGCCGG TGAACGCGCT GGCCAAGGCG
CTCGGCAAGG ATCTGGGGCC CTATACGCCC TATATCGCAG ACCTGCGGCT GGTGGATTTC
AAGGTGCGGA TCACCAATGG CGGCACCGAG GCGGTGACCC GTGTTCTGAT CGACAGCGAG
GACGGGCAGG GGCGGCGCTG GTCCACCGTT GGTGTGTCGG CCAACATCGT GGATGCAAGC
TTCGAGGCGT TGGTCGAGGC GATCCAGTGG AAGCTGATCC GCGACGGTGC GCCCCGCATC
GCGCTGGCCG CCGAATGA
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| Protein sequence | MNERLYLYDT TLRDGQQTQG VQFSTPEKQQ IAAALDALGI DFIEGGWPGA NPTDSEFFAS
APTFDHARFA AFGMTKRAGF SAENDDVLAA VLNAGTQAVC LVGKSHEYHV TRALGISLAE
NTENIARSVA HLVAQGREAI FDAEHFFDGY LANPGYAVET LQAALEAGAR WVVLCDTNGG
RLPAEVGRIT AEVIAAGVPG DRLGIHTHND TGNAVANALA AIDAGARQVQ GTLNGLGERC
GNANLVTLIP TLLLKEPYAS RFETGVSAAA LRDLVRVSRT LDDILNRVPT KSAPYVGASA
FAHKAGLHAS AILKDPSTYE HIPPEAVGNA RVIPMSNQAG QSNLRKRLAD AGIAVQKGDM
RLGALLDEVK RREDMGYSFD SAQASFELLA RRHLEGLPEF FEVKRYRVTV ERRKNKYDRM
VSLSEAVVVL KIGDEKMLSV SESMDETGCD RGPVNALAKA LGKDLGPYTP YIADLRLVDF
KVRITNGGTE AVTRVLIDSE DGQGRRWSTV GVSANIVDAS FEALVEAIQW KLIRDGAPRI
ALAAE
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