| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1665 |
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| Symbol | |
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| ID | 5713230 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | + |
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| Start bp | 1731213 |
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| End bp | 1732898 |
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| Gene Length | 1686 bp |
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| Protein Length | 561 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 641267581 |
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| Product | ABC transporter |
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| Protein accession | YP_001533008 |
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| Protein GI | 159044214 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1116] ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component |
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| TIGRFAM ID | [TIGR01184] nitrate transport ATP-binding subunits C and D |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.0690908 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 0.0741534 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCGCGA TTGAATTCAA GAACGTCTCC AAGAGCTTCG GGTCCGGCCC CAACCGTGCC
GACGTGCTCC GCGACATCAA CCTGACTGTG AAGGAGGGCG AGTTCCTTGT TCTGCTGGGC
TTCTCCGGCA CCGGCAAGAC CACATTGATC AACCTGATGG CCGGGCTGGA GGTTCCGACC
AAGGGCGAGG TCCTCTTTAA AGGGGCCCAG ATCACCGAAC CCAGCCCCGA ACGCGGCGTG
ATCTTCCAGA ACTACTCCCT GATGCCGTGG CTGACGGTGA ACGGCAACGT GCGCCTCGCG
GTGGACACCA TGTTCCCGAA ACTCAGCAAG GCAGCGCGCC AGGCGAAGGT CGATCACTAC
GTCAAGATGG TCGGGCTCTG CCATGCGACT ACCCGCCGTC CGGCGGAATT GTCCGGCGGC
ATGCGCCAGC GTGTGAATGT CGCGCGGGCG CTGGCCATGA ACCCCGAGGT CTTGCTGCTG
GACGAGCCGC TTTCGGCGCT CGATGCCCTC ACCCGCGCCA ATCTCGCCGA CGAAATCGAA
GGGATCTGGG AAAAAGAGAA AAAGACCTGC GTGCTGATCA CAAACGACGT GGACGAAGCC
ATCGTGCTTG CGGACCGCAT CATCGCGCTG AACCCCGACG GCACGCTGGG CGACGAATTC
GCCGTGACCA TCCCCCGCCC CCGCGACCGG GTGGAGATGA ACACCCATGT CGGCTTCAAG
AAACTGCGCG CCGATATCAC CAAGTACCTG ATGGACGTGG GTATCGAGGC GAAGGTCGAG
GGCACCAAAC TGCTCCCCGA TGTCACACCG ATCCACGGCG TGCCTGCCGC AATCGCCAAG
GCCCAGGCAG GCATGCTCAA TGAGCGTTTT CTCGACTTCT CCCAACTGCA CAAGGTCTAT
CCGACCCCCA AGGGCCCGCT GACCGTGGTC GAGGATTTCG ACCTCAAGCT CAACAAGGGA
GAGTTCATCT CGCTGATTGG GCACTCGGGT TGCGGCAAGT CGACGGTGCT GACCATGGCC
GCCGGGCTGA ACGAGATCTC CAAGGGAGCG ATCAAGCTCG ATGGCCGCCA TGTGGAAGGC
GCCGATCCCG AACGGGCCGT GGTGTTCCAG TCGCCATCGC TCTTCCCGTG GCTCACCGCG
CGGGAAAACG TCAGCGTCGG TGTCGACCGG GTCTACCCCA ACGCGAGCCA GGCCGAGCGG
CAGGACGTGG TCGAATACTA CCTCGAACGG GTCGGTCTGG CCGACAGCAT GAGCAAATCC
GGCGCCGAAC TGTCCAATGG GATGAAGCAG CGGGTCGGCA TCGCGCGCGC CTTCGCGCTC
AGCCCGAAAT TGCTGCTACT CGACGAGCCC TTCGGGATGC TCGACAGCCT CACGCGCTGG
GAGTTGCAAG AGGTCCTGAT GGAGGTCTGG TCGCGCACAA AGGTGACCGC GATCTGCGTC
ACACATGACG TGGACGAAGC GATCCTGCTG GCCGACCGTG TGGTCATGAT GACCAACGGC
CCACGGGCCA CGATCGGCAA GATCACTGAT GTGAACCTGC CCCGTCCGCG CACCCGCAAG
GCCCTTCTGG AGCATCCCGA CTACTACACT TACCGCCAGG AAGTACTCGA TTTTCTTGAG
GAATACGAGC ACGGCGCAAA ACCCAGGAAA CCCGCTCCGG CCCCTGAACC CATCGCCGCC
GAATGA
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| Protein sequence | MTAIEFKNVS KSFGSGPNRA DVLRDINLTV KEGEFLVLLG FSGTGKTTLI NLMAGLEVPT
KGEVLFKGAQ ITEPSPERGV IFQNYSLMPW LTVNGNVRLA VDTMFPKLSK AARQAKVDHY
VKMVGLCHAT TRRPAELSGG MRQRVNVARA LAMNPEVLLL DEPLSALDAL TRANLADEIE
GIWEKEKKTC VLITNDVDEA IVLADRIIAL NPDGTLGDEF AVTIPRPRDR VEMNTHVGFK
KLRADITKYL MDVGIEAKVE GTKLLPDVTP IHGVPAAIAK AQAGMLNERF LDFSQLHKVY
PTPKGPLTVV EDFDLKLNKG EFISLIGHSG CGKSTVLTMA AGLNEISKGA IKLDGRHVEG
ADPERAVVFQ SPSLFPWLTA RENVSVGVDR VYPNASQAER QDVVEYYLER VGLADSMSKS
GAELSNGMKQ RVGIARAFAL SPKLLLLDEP FGMLDSLTRW ELQEVLMEVW SRTKVTAICV
THDVDEAILL ADRVVMMTNG PRATIGKITD VNLPRPRTRK ALLEHPDYYT YRQEVLDFLE
EYEHGAKPRK PAPAPEPIAA E
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