| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1662 |
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| Symbol | |
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| ID | 5713227 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | + |
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| Start bp | 1727175 |
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| End bp | 1728353 |
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| Gene Length | 1179 bp |
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| Protein Length | 392 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 641267578 |
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| Product | periplasmic binding protein-like II |
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| Protein accession | YP_001533005 |
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| Protein GI | 159044211 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG0715] ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 0.429682 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 0.00361023 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAGCCGCG CGCCTTTGAA CATCGGTTAC CTCCCGCTGG TGGATGCCGC GCCCCTTATC
ATCGCCCAGA AGATGGGCTT TGCAGATACA GAGGGTATCA GGCTCGCGCT CCACAAGCAG
CCGTCCTGGT CGGCACTGCG GGACGGCGTG GCGCTCGGCA CGCTGGATGC GGGGCACATG
CTCAGCCCCC TGCCCGTGGC GATGTCCCTC GGTCTCGGCG GACTGCCGAC AGCGATGGAC
GCGCTTCTGG TCATGTCGGT GAACGGCAAT GTCATCGGCG TGTCCAACGG CCTTGCCAGC
AAGATGCGCA GCAATGGCTG GCGCGAGGAT TTCAGAGATC CGCTAGCAAC CGGCAAGCAC
CTGATCCGCG CCAGCGGACG CAAACTGCGC ATCGGCGTTC CTTTCCCGTT CTCGATGCAT
GCCGAACTTG TCTATTTCTG GCTGAATGCA CTGGGTCTGA AGACCCCCGA CGAGTTGGAT
GTCCGCACCG TCCCGCCGCC GCATATGGCC GATGCCATCG CCGCCAACGA GATCGATGCT
TTCTGCGTGG GCGAACCCTG GGGCTCCATT GCGGTCGAAA CCGGCGTTGG CGAATTGATA
CTGCCCGCGA ACTCGATCTG GACCTTCAGC CCGGAAAAGG TACTCGCTGC GCGACGCGAC
TGGATCGAGA CCAACCCGGC AGAAACCCGG GCCCTGATGC GCGCCGTCGT GACCGCGGCG
CGCTGGCTCG GCGACCCCGA GAACCGCCTT GTCGCCTCCG AAATCCTCGC GCAACCGGGG
CTGATCGATG TGCCTTCCGA AGTCATCGAC CGCGCTTTGT CCGGGCAGAT CACTTCGAAA
CCGAAAGCGC TTGCTCACCG GGTGCCAAGG TTTCTCGAGT TTCATGCAAG TGCGGCGAAC
TTCCCGTGGC GCAGCCAGGC TGCCTGGATC GCCAGCAACA TTGCCGCGAG GGTGGGGTTG
GATCGCACCG AGGCGATGCG CATTTCCATG GCGTGCTACC GAAGCGATCT CTATCGCGCG
AACCTGACCG ATCTCGGGCT CGATATGCCC GGAGCATCCG CCAAGATGGA GGGCGCCTTG
GCCCAACCCA CGCCTGTTGC ATCTGCGAAA GGTTCGATCA TTCTGGGACC GGATGCGTTT
TTTGACGGCT CGATTTTTGA TCCGGGCAAG GGTTTGTGA
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| Protein sequence | MSRAPLNIGY LPLVDAAPLI IAQKMGFADT EGIRLALHKQ PSWSALRDGV ALGTLDAGHM
LSPLPVAMSL GLGGLPTAMD ALLVMSVNGN VIGVSNGLAS KMRSNGWRED FRDPLATGKH
LIRASGRKLR IGVPFPFSMH AELVYFWLNA LGLKTPDELD VRTVPPPHMA DAIAANEIDA
FCVGEPWGSI AVETGVGELI LPANSIWTFS PEKVLAARRD WIETNPAETR ALMRAVVTAA
RWLGDPENRL VASEILAQPG LIDVPSEVID RALSGQITSK PKALAHRVPR FLEFHASAAN
FPWRSQAAWI ASNIAARVGL DRTEAMRISM ACYRSDLYRA NLTDLGLDMP GASAKMEGAL
AQPTPVASAK GSIILGPDAF FDGSIFDPGK GL
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