Gene Dshi_1657 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDshi_1657 
Symbol 
ID5713222 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDinoroseobacter shibae DFL 12 
KingdomBacteria 
Replicon accessionNC_009952 
Strand
Start bp1723024 
End bp1723923 
Gene Length900 bp 
Protein Length299 aa 
Translation table11 
GC content62% 
IMG OID641267573 
ProductABC-3 metal transporter 
Protein accessionYP_001533000 
Protein GI159044206 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG1108] ABC-type Mn2+/Zn2+ transport systems, permease components 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value0.917643 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value0.00082794 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
GTGATCGGGA CGCTTCTGGA GCCGTTCAGC TACGGCTACA TGACAAATGC GATCTGGGTC 
AGCGCGCTGG TTGGGGCGGT CTGTGCCTTT CTGTCGTGTT ACCTGATGCT CAAGGGCTGG
TCGTTGATCG GCGACGCGCT GAGCCATGCG ATCGTGCCGG GTGTGGCGGG CGCATACATG
CTGGGGCTGC CCTTCGCACT CGGGGCGTTC CTGTCCGGGG GCTTGGCGGC AGGTACAATG
CTGTTTCTGA ACCAGCGCTC CGGGCTGAAG GAGGACGCGA TCATCGGTCT GATCTTCACC
TCTTTCTTCG GGCTGGGCCT GTTCATGATG TCGATCTCGC CGACATCCGT GGATATCCAG
ACCATCATGC TGGGCAATAT CCTGGCGATC ACGCCGACTG ATACAGTGCA GCTGGTTTTA
ATCGGAGGCG TGTCGCTCGC CGTGCTTCTG GTGAAGTGGA AGGACCTGAT GGTCACATTC
TTCGACGAGA ACCACGCGCG GTCCATCGGG CTGAACCCGG TCCGATTGAA GTTCCTGTTC
TTCGTGCTTC TTTCGGCCTG TACGGTCGCA GCGTTGCAAA CGGTTGGCGC TTTTCTCGTG
ATCGCCATGG TGGTGACACC GGGCGCGACC GCCTACCTTT TGACCGACCG GTTCCAACGG
CTGTTGATCA TCGCGGTCTG CATCGGAGCG GGGAGTGCGG CTGTTGGGGC CTATTTTAGC
TACTATCTCG ACGGGGCGAC GGGCGGGATC ATCATTTGCT TGCAGACGCT CCTGTTTCTG
CTGGCGTTCT TCTTTGCGCC CAAGCACGGG CGTCTGGCCG CGCGGCGGCG GGCCGCGCGT
GGCATGGTCA TGGCACAGCC GTCGGAGGGT GCGACGCGCC CCCTGGAGGC GGCAGAATGA
 
Protein sequence
MIGTLLEPFS YGYMTNAIWV SALVGAVCAF LSCYLMLKGW SLIGDALSHA IVPGVAGAYM 
LGLPFALGAF LSGGLAAGTM LFLNQRSGLK EDAIIGLIFT SFFGLGLFMM SISPTSVDIQ
TIMLGNILAI TPTDTVQLVL IGGVSLAVLL VKWKDLMVTF FDENHARSIG LNPVRLKFLF
FVLLSACTVA ALQTVGAFLV IAMVVTPGAT AYLLTDRFQR LLIIAVCIGA GSAAVGAYFS
YYLDGATGGI IICLQTLLFL LAFFFAPKHG RLAARRRAAR GMVMAQPSEG ATRPLEAAE