| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1647 |
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| Symbol | hpcH |
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| ID | 5713212 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | - |
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| Start bp | 1711064 |
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| End bp | 1711846 |
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| Gene Length | 783 bp |
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| Protein Length | 260 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 641267563 |
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| Product | 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase |
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| Protein accession | YP_001532990 |
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| Protein GI | 159044196 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG3836] 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.0000000936212 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGCAGCGC CTGAAAACCA ATTGAAACAA GCCCTCTTGG CCGGCGACGT TCAGATCGGC
ATCTGGCTGG GCTTCGGCGC ACCCGCGGTT GCGGAACTGG CGGCGGGCTG TGGCTTCGAT
TGGTGCCTCG TGGATGGAGA GCATTCGCCC AACGATCCGG CGCAGATGAT CGACCAACTG
CGCGCCATGG TCGGGCAGGG CGCCATGCCG ATTGTCCGCG TCCCCGTGGG CGAGGACTGG
GTGCTCAAGC GCGCGCTCGA TCTCGGGGTC CAGACGATCA TGGTGCCAAT GGTCGAAACA
GCCGCGCAAG CGCAGCAGAT TGTGCGTGCC ATGCGCTATC CCCCCGACGG CGTGCGCGGC
GTGGGGGCGG CCCTCGCCCG GGCATCTGGG TATTCTCTCG ATGCCGAGTA TGTCACTACG
GCAAACGCGC AGATCTGCAC CATCGTGCAG ATCGAGAGCC ATGCAGCGGT GCGGGCCATT
CCGGAGATCG CGGCGGTGGA GGGGGTCGAT GTGCTCTTCA TCGGTCCTGC GGATCTTGCC
GCGGACATGG GCTATCCCGG GCGCGCGGAC GCGCCCGAGG TGGATGCGGT GATCTGCGCC
GCCCTCGGCG AGATCGCGCG CAGCGGCAAG GTGCCCGGTG TGCTCGCTTT CTCTGAGACA
GATGCGGTGC GCTTTGCGGC GGCGGGCGCC CGGTTCGTCG GCGTAGGGGC CGATGTCACG
TCGCTGGCGG TGGCCCTGCG CGGATTGTCT GCGTCGTCGC GCGCCCGCCT GAGCTCCCCC
TGA
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| Protein sequence | MAAPENQLKQ ALLAGDVQIG IWLGFGAPAV AELAAGCGFD WCLVDGEHSP NDPAQMIDQL
RAMVGQGAMP IVRVPVGEDW VLKRALDLGV QTIMVPMVET AAQAQQIVRA MRYPPDGVRG
VGAALARASG YSLDAEYVTT ANAQICTIVQ IESHAAVRAI PEIAAVEGVD VLFIGPADLA
ADMGYPGRAD APEVDAVICA ALGEIARSGK VPGVLAFSET DAVRFAAAGA RFVGVGADVT
SLAVALRGLS ASSRARLSSP
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