| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1642 |
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| Symbol | alaS |
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| ID | 5713207 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | - |
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| Start bp | 1701885 |
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| End bp | 1704548 |
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| Gene Length | 2664 bp |
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| Protein Length | 887 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 641267558 |
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| Product | alanyl-tRNA synthetase |
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| Protein accession | YP_001532985 |
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| Protein GI | 159044191 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0013] Alanyl-tRNA synthetase |
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| TIGRFAM ID | [TIGR00344] alanine--tRNA ligase |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.338529 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.000000000232232 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCCGAGCC TTAATGAAAT CCGCAGTACG TTCTTGAACT TCTTCGGTGG CCACGGCCAC
GAGATCGTCG ACAGCTCACC GCTTGTGCCG CGCAACGACC CGACGCTGAT GTTCACTAAT
GCGGGGATGG TGCAGTTCAA GAACGTCTTC ACTGGCCTGG AGCACCGCGA TTACAACCGC
GCCACCACCA GCCAAAAATG CGTGCGCGCA GGTGGAAAGC ACAATGATCT CGACAATGTG
GGCTATACCG CGCGTCACCA TACCTTCTTC GAAATGCTGG GGAATTTCAG CTTCGGGGAC
TATTTCAAGG AAGATGCGAT TCCCTTCGCC TGGGACCTGA TCACCAAGGA GTTCGGCATC
GACAAGTCCC GACTTCTCGT CACGGTCTAC CACACCGATG ACGAGGCGGC CGAGATATGG
AAGAAGCACG CGGGCCTGAG CGATGACCGC ATCATCCGGA TTCCGACCAA TGACAATTTC
TGGATGATGG GCCCGACGGG GCCTTGCGGA CCTTGTACCG AGATTTTCTA TGACCATGGG
GACCACATCT GGGGCGGGCC CCCGGGCAGC CCGGAAGAGG ACGGCGACCG TTTCATCGAG
ATCTGGAACC TCGTCTTCAT GCAGTTCGAG CAATTCGAGG ATGGCACGCG GGAGCCTTTA
CCAAAGCCGT CCATCGACAC GGGAATGGGA CTTGAACGGA TCGGCGCATT GCTGCAGGGC
AGCCATGACA ATTATGACAC GGACCTGTTC AAGACTTTGA TCGAGGCTTC TGCGCATGCC
ACCAGCGTCG ATCCTTACGG CGACAAGAAC GTTCATCACC GCGTCATCGC CGATCATCTG
CGCTCGACCT CGTTCCTGAT CGCAGACGGG GTGATGCCAT CGAACGAAGG GCGCGGTTAC
GTACTGCGCC GGATCATGCG GCGTGCCATG CGTCATGCGC ATTTGCTGGG CGCTCAGGAC
CCGGTCATGT ATCGACTCGT TCCCGCGCTT GTCGGACAGA TGGGGCAGGC TTTCCCCGAG
CTGGGGCGCG CGCAGGCGTT GATCGAAGAG ACACTGATGC TGGAGGAGAC CCGTTTCCGG
CAGACGCTGG ACCGGGGCCT GAAGCTGCTG GACGAGGCCG TGGCCGATGT TCCCGAGGGG
GGTGCCTTGC CGGGCGAGAC AGCGTTCAAG CTTTATGACA CCTATGGTTT TCCGCTCGAT
CTGACTCAGG ATGCGCTGCG CGAGAAGGGA CGTGCCGTGG AAACCGAGGG TTTTGATGCC
GCCATGGCGG ATCAGAAGGC CAAAGCTCGC GCGGCTTGGG CAGGCTCCGG TGAAACTGCC
GATGAGAGCA TTTGGTTCGA TCTGGCAGAG ACTCATGGCG CAACCGAGTT CCTGGGCTAT
GACACCGAGG TCGCCGAAGG ACAGGTTCTG GCACTGGTCA AGGATGGTGC GCAGGTCGCG
CAACTGGCCG AGGGCGAGAC CGGATGGATG GTGCTTAACC AGACACCGTT CTATGCGGAA
TCCGGCGGGC AGGTCGGAGA TAGCGGGGGC TATCTGAAGT CCAATGGCTC CGGGGCGATC
CACGACACCC AGAAAAGGAA CGGCCTCTTC GCGCACAAGG TAACCCCGAA AGCGCAACCC
TTGAAAGCCG GCGACGTGCT GGAGATGCGA GTCGATCCCG CGCGGCGCAC GGCGATCCGG
GCCAACCACT CCGCGACGCA CCTTTTGCAC GAGGCGCTGC GCCAGGCCTT GGGCGCTCAT
GTGGCGCAGC GTGGATCTCT GAATGCCGCG GACCGCTTGC GGTTCGATTT CAGCCATTCC
AAGGCCCTGA CGCTCGAAGA GCTGCAAAAA GTCGAGGCCG AGGTGAACGC CTACATTCGC
CAGAACAGTC CCGTTGAGAC CCGCATCATG ACCCCTGACG CGGCACGTGA TCTCGGTGCG
CAGGCCCTTT TTGGCGAGAA GTATGGCGAC GAGGTGCGTG TTGTGTCGAT GGGCCGCCAA
TCCGGCTCCG GCAAAGGTGT TTCGGGCGAG ACCTATTCGC TCGAGCTTTG CGGCGGCACC
CATGTGAAGC AGACCGGCGA TATTGGTGTG TTCGTCACGG TGGGAGAGAC GGCGTCGTCT
TCTGGGGTGC GCCGGATCGA GGCGCTGACC GGCGAAGACG CTTTCGCCTA TCTCAGTGCT
CAGGATTACA GGCTTGCGGA AGTTGCAGCC AGCCTCAAGG CGCAGGCTGC GGATGTTCCG
GAGCGCGTGC GATCCCTGCT GGACGAACGC AAGGCCTTGC AGAACGAAGT GGCGCAGTTG
CGCCGGGAAC TGGCCATGGC TGGAGGCGGG CAAGGCACCG CTGCACCCGA GGCCGAAGCT
GTGGCGGGGG TGCCCTTTCT GGCGCAGTCC CTGTCCGGGG TATCCGGGCG CGATCTTCCG
TCGTTGATCG ACGAGCACAA AGCGCGGCTC GGTTCCGGGG CGATCCTGCT GATTGCCGAT
ACCGGGGGCA AGGCCGCTGT TGCCGCCGGT GTGACAGCGG ATCTGACCGA CCGTCTGTCG
GCCGTCGATC TCGTCAAAGC CGCGGTGGCG GAGCTTGGGG GCAAGGGCGG CGGTGGTCGT
CCTGACATGG CTCAGGGCGG GGGCAAGGAC GCGAGCAAAG CGGATGCGGC GATCGCCGCC
GCCAAGGCAG TGATTGGAGG ATAA
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| Protein sequence | MPSLNEIRST FLNFFGGHGH EIVDSSPLVP RNDPTLMFTN AGMVQFKNVF TGLEHRDYNR
ATTSQKCVRA GGKHNDLDNV GYTARHHTFF EMLGNFSFGD YFKEDAIPFA WDLITKEFGI
DKSRLLVTVY HTDDEAAEIW KKHAGLSDDR IIRIPTNDNF WMMGPTGPCG PCTEIFYDHG
DHIWGGPPGS PEEDGDRFIE IWNLVFMQFE QFEDGTREPL PKPSIDTGMG LERIGALLQG
SHDNYDTDLF KTLIEASAHA TSVDPYGDKN VHHRVIADHL RSTSFLIADG VMPSNEGRGY
VLRRIMRRAM RHAHLLGAQD PVMYRLVPAL VGQMGQAFPE LGRAQALIEE TLMLEETRFR
QTLDRGLKLL DEAVADVPEG GALPGETAFK LYDTYGFPLD LTQDALREKG RAVETEGFDA
AMADQKAKAR AAWAGSGETA DESIWFDLAE THGATEFLGY DTEVAEGQVL ALVKDGAQVA
QLAEGETGWM VLNQTPFYAE SGGQVGDSGG YLKSNGSGAI HDTQKRNGLF AHKVTPKAQP
LKAGDVLEMR VDPARRTAIR ANHSATHLLH EALRQALGAH VAQRGSLNAA DRLRFDFSHS
KALTLEELQK VEAEVNAYIR QNSPVETRIM TPDAARDLGA QALFGEKYGD EVRVVSMGRQ
SGSGKGVSGE TYSLELCGGT HVKQTGDIGV FVTVGETASS SGVRRIEALT GEDAFAYLSA
QDYRLAEVAA SLKAQAADVP ERVRSLLDER KALQNEVAQL RRELAMAGGG QGTAAPEAEA
VAGVPFLAQS LSGVSGRDLP SLIDEHKARL GSGAILLIAD TGGKAAVAAG VTADLTDRLS
AVDLVKAAVA ELGGKGGGGR PDMAQGGGKD ASKADAAIAA AKAVIGG
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