| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1622 |
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| Symbol | |
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| ID | 5712766 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | - |
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| Start bp | 1686892 |
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| End bp | 1688406 |
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| Gene Length | 1515 bp |
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| Protein Length | 504 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 641267537 |
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| Product | putative hemolysin precursor |
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| Protein accession | YP_001532965 |
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| Protein GI | 159044171 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG2931] RTX toxins and related Ca2+-binding proteins
[COG3240] Phospholipase/lecithinase/hemolysin |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 0.0615311 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGAGTA CACTTTCCTT TTCCAACCTT GCGACATTCG GAGCGAGTCT GACCGACTGG
GGCGGCATGT ACGGGCTGAC CAAGGATGTC ATCCGCGTGC CCCTGCCGCT TGCGAAAAAC
GGCTACTCCA TCGGTTATTC CAACGGGTCC GTCTACACGG TCTATGCTTC GGATTTGTTG
GAGATCCCGA CCCTTGAGAA CTACGCGATC GGCAGTGCCT CGGCGCTTGG CTCCACCATC
CTCGAGGATT TTCTGGAAGA GAAGTTCATC GCCTACACGA TCAAGGTCGA TCGGGATGAT
CCTCGCCTGA AGGCTGAGTT CAACTATACC GCGCAGGTCG ATCGGTTCCT GGAGGCCAAC
GCAGGCGTGG ACCTGTCCGG GACGATGTCG CTGATCCAGA TGGGTCTTGT CGACTACATG
AATTTCTTTC CAAACTTCAG TCGTGGCGGG CCCAGTTCTT ATAGCGAGTT CACGGTCGAA
GTGCTCGGCA GTGTTTTTGA CGGCGTCGAC CGGATGATGG ATGCAGGCGT CGGGCAGGTG
GTTCTGAACA CTCTGCCGGA TCCCAGCAAC TTCGTCTTCA TGTCCTGGAT GCCATCGTTT
TATCTGCGCA AGGTCGACAA TGCGGTCGCG CATCACAATG ACATGCTGCA GGCAGAGGTG
GCCACACGCG CCGCGGCCGG CGAGAACATT GTTGTGGTTG ACATGAATGC TCTTACTGCG
GCCATCGATG ACGATCCCAG CGCCTTCGGG TTCGTGGCCT CTGCTGGCAG TTTCATAAGT
TCTTCGGTGC GGTTCTGGCT ATCTGCTTCG TCGGCGCCTG ACGAGTACGA TCCGGATCAG
GTCGCGTTCT TCGATCCATT CCATCCCAGC ACGGCATATC ACGGTGTCAT GGGGGTCTTT
CAGGCGGAAA GCCTGACCAA GGCGACAACC GTGCTCGAAG AGGATGGCGC AGTTTTTCAA
GGAAGTGCCG CTGGAGACAT GGTGCTCGTG CGCGGCGATG GCGCGACTAT CATGGCGCAG
CAAGGGGAGG ACACTGTCAT TGGCGGTGTC GGCCGCGACA GCCTTTCCGG AGGCGCGGGC
GATGACGTCC TGGCCGGCGG CAGCGGTGAT GACAGCCTCG ATGGCGGTGC CGGCGCCGAT
GTTCTGGCCG GTGGCACGGG GGATGACCTG CTTATGGGCG GGGATGGCAA TGACGTTCTG
ATAGACGGGC TGGGGTCCGA TACACTTCTC GGTGGTATCG GTCATGACGT GTTCCTGTTT
TGCGATCCCA GGCTCATCGG AGGACAAAGC GGCACCGACT TCGACACATT CGATGGAGGA
GAAGGCCATG ATATTCTGTA CCTCGCCTTG GGAGATGCGC AGCGACAGGT TTTCGAGACA
ACGGGCAGCC TTGCCGAGAT CGGGATCTTC GCAACAGGGA TCGAGGAGGT CGTTCTTGTC
GCGCACCGGC TCGAGCTTGT GGATGTTTCC AGCGATGCGC GTCTCGCGGA GGCGGACCTT
TGGGGGTTCG TGTGA
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| Protein sequence | MTSTLSFSNL ATFGASLTDW GGMYGLTKDV IRVPLPLAKN GYSIGYSNGS VYTVYASDLL
EIPTLENYAI GSASALGSTI LEDFLEEKFI AYTIKVDRDD PRLKAEFNYT AQVDRFLEAN
AGVDLSGTMS LIQMGLVDYM NFFPNFSRGG PSSYSEFTVE VLGSVFDGVD RMMDAGVGQV
VLNTLPDPSN FVFMSWMPSF YLRKVDNAVA HHNDMLQAEV ATRAAAGENI VVVDMNALTA
AIDDDPSAFG FVASAGSFIS SSVRFWLSAS SAPDEYDPDQ VAFFDPFHPS TAYHGVMGVF
QAESLTKATT VLEEDGAVFQ GSAAGDMVLV RGDGATIMAQ QGEDTVIGGV GRDSLSGGAG
DDVLAGGSGD DSLDGGAGAD VLAGGTGDDL LMGGDGNDVL IDGLGSDTLL GGIGHDVFLF
CDPRLIGGQS GTDFDTFDGG EGHDILYLAL GDAQRQVFET TGSLAEIGIF ATGIEEVVLV
AHRLELVDVS SDARLAEADL WGFV
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