| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1577 |
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| Symbol | ispDF |
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| ID | 5712721 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | + |
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| Start bp | 1644540 |
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| End bp | 1645742 |
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| Gene Length | 1203 bp |
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| Protein Length | 400 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 641267492 |
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| Product | bifunctional enzyme ispD/ispF |
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| Protein accession | YP_001532920 |
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| Protein GI | 159044126 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG0245] 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
[COG1211] 4-diphosphocytidyl-2-methyl-D-erithritol synthase |
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| TIGRFAM ID | [TIGR00151] 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
[TIGR00453] 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 0.996682 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 0.0503035 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGTCGCACA GAGTCCTAGG AACGGAGCGG ATTTCACCGA GAGAAGAGCA TGTCTTGACG
CCCAATGTTA CGGCCATTCT TGTCGCGGCG GGGCGCGGCA CACGCGCGGG CGGTGGGCTT
GCCAAGCAAT GGCGACCGCT TGGTGCGCGC CGGGTGATCG ACTGGACGCT GGCGGCATTC
GACCGGGCGA CGCAGGTGTC GGAGCTGCTG GTGGTGCTGC ACCCGGAGGA TATGGACCTG
GCAGCCACGC TGACCGCGGC CAAACCGCTG CGCTGCGTGT CCGGAGGTGC GACGCGGAGC
GCGTCGGTCG CCTGTGCGCT CGCGGCGGTG GCCGACCCGG AGGCGATCGT GCTGATCCAC
GATGCGGCGC GGCCGGTGGT GTCGGCCGAC CTGATCGCCC GGGTTGTCGC GGGGGTGATC
GAGACCGGGG CGGCGGCCCC TGCCCTGCCG GTGGTCGACG CGCTCTGGAC CGGGGCCGGG
GATCGGGTGA CGGGGATGCA GCCGCGCGAC GGGCTCTACC GCGCGCAGAC CCCGCAAGGT
TTTCACGCCG GTGCGATCCG GGACGCCCAT GCGGCGGCCA CCGGGGCGGC GGCGGATGAT
GTGGAGATCG CCCGCGCCGC GGGTATGCCG GTGGCGATCG TCGCGGGCGA CGAGCAGAAC
TTCAAGATTA CCTACCCGCA GGACTTCGCC CGCGCGGCGG CCCTGCTGAA AGAGAGGGAC
AAGATGGATA TTCGCACCGG CAATGGTTAC GACGTGCACC GGTTCGGCAC CGGCGACGCG
GTGATCCTGT GCGGCGTGGA GGTCCCCCAT GACCGCGCGC TGATGGGGCA TTCTGATGCA
GATGTGGGCA TGCACGCGGT GACGGACGCG ATCTATGGCG CGCTGGGGGA TGGCGATATC
GGCCAGCACT TCCCGCCCAG CGATCCGCAA TGGAAGGGCG CGGCGAGCGA GATCTTTCTG
CGCCACGCGG TCGCTCTGGC CGCTGAGCGG GGCTACACCA TCACGCATAT GGACTGCACG
CTGGTCTGTG AGCGCCCGAA GATCGGACCG TACCATGCCG TAATGAAAGC GAAAATGTCC
GAATTGATGG GGCTGCAACC GGATCAGGTG AGCGTGAAGG CGACCACGTC GGAGCGGCTG
GGCTTCACCG GGCGCGAGGA AGGGATCGCG GCCCTGGCCA CGGTCACATT GGTGCGGACA
TGA
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| Protein sequence | MSHRVLGTER ISPREEHVLT PNVTAILVAA GRGTRAGGGL AKQWRPLGAR RVIDWTLAAF
DRATQVSELL VVLHPEDMDL AATLTAAKPL RCVSGGATRS ASVACALAAV ADPEAIVLIH
DAARPVVSAD LIARVVAGVI ETGAAAPALP VVDALWTGAG DRVTGMQPRD GLYRAQTPQG
FHAGAIRDAH AAATGAAADD VEIARAAGMP VAIVAGDEQN FKITYPQDFA RAAALLKERD
KMDIRTGNGY DVHRFGTGDA VILCGVEVPH DRALMGHSDA DVGMHAVTDA IYGALGDGDI
GQHFPPSDPQ WKGAASEIFL RHAVALAAER GYTITHMDCT LVCERPKIGP YHAVMKAKMS
ELMGLQPDQV SVKATTSERL GFTGREEGIA ALATVTLVRT
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