| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1576 |
|---|
| Symbol | dus |
|---|
| ID | 5712720 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | - |
|---|
| Start bp | 1643396 |
|---|
| End bp | 1644397 |
|---|
| Gene Length | 1002 bp |
|---|
| Protein Length | 333 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 641267491 |
|---|
| Product | tRNA-dihydrouidine synthase |
|---|
| Protein accession | YP_001532919 |
|---|
| Protein GI | 159044125 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0042] tRNA-dihydrouridine synthase |
|---|
| TIGRFAM ID | [TIGR00737] putative TIM-barrel protein, nifR3 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 0.549803 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 0.0427805 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGACCGTTC TCTTGGCAGA GCAACCGCTG GCAAACCCGG TTCTTCTCGC GCCCATGGCG
GGGATAACGG ACTTGCCGTT TCGAAATGTC GTGTCCCGCT TCGGGGCCGG TCTCGTGGTG
TCCGAGATGG TCGCCAGTCA GGAAATGGTA CAGGCCAAGG CCTCCGTCCG GGCGCGGGCC
GAACTGGGGT TCGGCGCGCA GGCCACCGCC GTGCAACTCG CCGGGCGAGA GGCATACTGG
ATGGGCGAGG CCGCGCGGTA CGTGGCCGAC CAGGGCGCGC GCGTCATCGA CATCAACATG
GGCTGCCCGG CCAAGAAGGT CGTCAATGGC GCGTCGGGCT CGGCGCTTAT GCGCGATCTC
GACCACGCGC TGACCCTGAT CGACGCGGTG GTGGCGGCGG TGGATGTGCC CGTGACGCTC
AAGACCCGGC TGGGCTGGGA CGACGACTGC CTCAACGCAC CTGACCTGGC GCGCCGGGCC
GAGGCCGCGG GCATCGCCAT GGTCACGATC CATGGGCGCA CACGCTGCCA GTTCTACAAG
GGCGCGGCTG ACTGGACCGC CATCGGGCGT GTCAAACGCG CGGTGTCGAT CCCGGTGATC
GCGAACGGCG ATATTGTCGA TACCGCCGCC GCGGCGCAGG CCCGCGCGGC CTCTGGCGCC
GACGGCCTGA TGGTGGGGCG CGGCGCGCAA GGACGCCCCT GGCGGCTGGC CGAGATCGCC
GCTGCCCTCT ATGGCGCGCC CGCGCCCGAC ATCCCCAGTG GCGACGCGCT GGTCGATCTG
GTTCTCGCCC ATTTCGAGGC CATGCTCGCC TTCTACGGCC CCGAACTTGG CCTGCGCACC
GCGCGCAAGC ATCTCGGCTG GTATATGGAG GCACGGCCCG ACGGGTTCAG CCCACCGAAA
TCCCTGCGCC GCGCGATCCT CACCGCCACC GACCCGGCAA CGGTCCGCAG GCTCGTGCCG
GCGGCGCTCA CCGACGCTGA TACGACGCAG GTGGCCGCAT GA
|
|---|
| Protein sequence | MTVLLAEQPL ANPVLLAPMA GITDLPFRNV VSRFGAGLVV SEMVASQEMV QAKASVRARA
ELGFGAQATA VQLAGREAYW MGEAARYVAD QGARVIDINM GCPAKKVVNG ASGSALMRDL
DHALTLIDAV VAAVDVPVTL KTRLGWDDDC LNAPDLARRA EAAGIAMVTI HGRTRCQFYK
GAADWTAIGR VKRAVSIPVI ANGDIVDTAA AAQARAASGA DGLMVGRGAQ GRPWRLAEIA
AALYGAPAPD IPSGDALVDL VLAHFEAMLA FYGPELGLRT ARKHLGWYME ARPDGFSPPK
SLRRAILTAT DPATVRRLVP AALTDADTTQ VAA
|
|---|
| |