| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1573 |
|---|
| Symbol | ntrY |
|---|
| ID | 5712717 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | - |
|---|
| Start bp | 1638597 |
|---|
| End bp | 1640900 |
|---|
| Gene Length | 2304 bp |
|---|
| Protein Length | 767 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 641267488 |
|---|
| Product | histidine kinase |
|---|
| Protein accession | YP_001532916 |
|---|
| Protein GI | 159044122 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5000] Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.0740881 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 0.0763149 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCGAGCAG TCACGGGAAG ATATCTCAGC CGCTGGGTGA CGCGTTACGT TTCCCTGCGG
AACCTGCAAA CCTGGACCAC CCTTGGCATG GTGGCTCTGG GACCGATCCT TGCGATCGCC
ACTTTCCTCG TGCTCGGCCC GCTGGATCAG GGACAGGATG CCACGACCCT GCGCGTGGTG
ATTCTCGCCG ATTTCGTCTA CGTCCTGATC CTCGCCGCAC TCGTTCTGCA GCGCGTTGCC
CGGATGATCG CCGCCCGCCG CGCCCGGTCG GCGGGATCCC GCCTGCACCT GCGCCTGACC
GGCGTCTTCG CCATCGTCGC CCTCGTGCCC ACGGTTCTGG TCGCGGTCTT CGCGACGATC
ACGGTGAATT TCGGGCTCGA AGGCTGGTTC TCGGACCGGG TGCAGCGGGT GCTCGGCGCG
TCCCTCGCCG CCGCCGAGGC CTATGAGGAA GAGCAGCGCG TGCAGCTGCA GATCGACACC
GCGGCGCTGG CCTCCTATCT CGACCGCGCC CGGGCGGAGC GCGTCTTTCT CAGCGATGGC
GACCTGCGGC AGCTGCTCGC CCAGGGTCAG AGCAGCGTGC AGCGCGGGCT GCGCGAGGCT
TATATCGTCA ACGCCAATGG CGACATCCGC ATCCGGGGCG AGCGCAGCTA CCTCTTTGAC
TTCGAACGTC CCACCCCGGA CCAGATCGCT GCGTCCGAAC AGGGCACCCC GATCGTTATC
GAAGACTGGA CCAACAACGA ATTCCGTGCG CTTGTGAAGC TCGCCCGCCA CGTGGACCGC
TATCTCTATG TCAGCCGCGA GGTGGATGGC GAGATCCTGA CCCTGCTCGA CGACACCCAG
GAAACCGTGC AGCTCTTTCG CCAACTCGAA AGCGACCGGG GCCAGCTGCT GTTCGATTTC
GGCCTGCTCT ATATCGGCTT CGCGGTCATC CTCATCATCG CCTCGATCTG GCTCGGGCTG
TGGTTCGCCG AACGTCTGTC GCGCCCGGTG GGGCGGCTGG CGGGGGCGGC GCAACGGGTC
GGGGCAGGGG ACCTGGACGT GAAGGTCCCC GAACAGCAGG GCGATGACGA GATCGCCATG
CTGGGGCGCC TTTTCAACCA GATGACCCGG CAACTGAAGG CCCAGCGCGA GGCGCTGTTG
GAAAACACCA ACCAGATCGA GCGCCGCCGC CGCCTGTTCG ATTCCGTGCT GGGCTCGGTC
ACTGCCGGGG TCATCGGCCT CGATTCCCGG GGGCGGGTGG ATTTCATGAA CCGCTCCGCC
ACCGCCATGC TGGCCCTCGA CGGTGTCACC GTCAGTGGCC GCGGCATCGA CGAGGTGGTG
CCCGAGTTCG AGGACCTCTT CGACAAGCTG CAGGGCGGTC TGCGCGACGT GGCCCAGCAA
CAGGTCAGCC TGACCCGGCA GGGACGGCAG GAAAGCCTGC TGGTGCGTAT CGCCAAACGC
CTCAACCGCG AGGACCGGCT CGAAGGCTAC GTGGTGGCCT TCGACGATGT GACCGATCTT
GCCACCGCCC AGCGCATGGC CGCCTGGGGC GACGTGGCCC GCCGTATCGC CCACGAGATC
AAGAACCCGC TCACCCCGAT CCAGCTTTCC GCAGAGCGCA TGAAACGCAA GTTCGGCCCC
CGCCTCGGCG AGGACGGCCC CGCCCTGGTG GAGCTCAGCG ATGTGATCAT CCGCCAGACC
GCCGATTTGC GCCGAATAGT GGACGAATTC TCGAAATTCG CCCGCATGCC GGAGCCGGAG
ACCGCCCATC TGGATCTCGC GCAACTGGTG CGCGACGCAG TGCTTTTACA GCAGGTCGCG
CAACCCGACG TGACCTTCGT CACCGACATC TCGCCGGACC CTGTGCCTGC CGATCTCGAC
GCAACCCTGA TGGGGCAGGC GCTTACCAAC CTGCTCAAGA ACGCCGGCGA AGCCATCGAG
AGCCGCCAGA CCGGCAAGAC CGGCGATACC CGCCCGGGCG AGATCCGCGT GAGTCTCCGC
AACCTGGGCC GGGAGGCGGA GCTGACCATC GCCGATAACG GCATCGGCCT GCCACCGGAC
ACCGCCAAAC TCTTCGAACC CTACGTGACG ACCCGCGACA AGGGCACCGG CCTCGGTCTG
CCCATCGTCC GCAAGATCGT AGAAGAACAC CAGGGCACGC TGGAGCTGCG GCCCGCCGAA
CCCTTCACCC CGGACACCCC GCCCGGGGCT GCCGCGGTGA TCCTGCTTCC GACGCGCCCT
CCGGATCCCG AGGCCGCCAC CCAAGTCGAC GCATCCCGAC CCGAACCCGA CATAACGCCC
CCAAAAAAGA CTGCGACAGC ATGA
|
|---|
| Protein sequence | MRAVTGRYLS RWVTRYVSLR NLQTWTTLGM VALGPILAIA TFLVLGPLDQ GQDATTLRVV
ILADFVYVLI LAALVLQRVA RMIAARRARS AGSRLHLRLT GVFAIVALVP TVLVAVFATI
TVNFGLEGWF SDRVQRVLGA SLAAAEAYEE EQRVQLQIDT AALASYLDRA RAERVFLSDG
DLRQLLAQGQ SSVQRGLREA YIVNANGDIR IRGERSYLFD FERPTPDQIA ASEQGTPIVI
EDWTNNEFRA LVKLARHVDR YLYVSREVDG EILTLLDDTQ ETVQLFRQLE SDRGQLLFDF
GLLYIGFAVI LIIASIWLGL WFAERLSRPV GRLAGAAQRV GAGDLDVKVP EQQGDDEIAM
LGRLFNQMTR QLKAQREALL ENTNQIERRR RLFDSVLGSV TAGVIGLDSR GRVDFMNRSA
TAMLALDGVT VSGRGIDEVV PEFEDLFDKL QGGLRDVAQQ QVSLTRQGRQ ESLLVRIAKR
LNREDRLEGY VVAFDDVTDL ATAQRMAAWG DVARRIAHEI KNPLTPIQLS AERMKRKFGP
RLGEDGPALV ELSDVIIRQT ADLRRIVDEF SKFARMPEPE TAHLDLAQLV RDAVLLQQVA
QPDVTFVTDI SPDPVPADLD ATLMGQALTN LLKNAGEAIE SRQTGKTGDT RPGEIRVSLR
NLGREAELTI ADNGIGLPPD TAKLFEPYVT TRDKGTGLGL PIVRKIVEEH QGTLELRPAE
PFTPDTPPGA AAVILLPTRP PDPEAATQVD ASRPEPDITP PKKTATA
|
|---|
| |