Gene Dshi_1569 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDshi_1569 
SymboltrkA 
ID5712713 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDinoroseobacter shibae DFL 12 
KingdomBacteria 
Replicon accessionNC_009952 
Strand
Start bp1634542 
End bp1635918 
Gene Length1377 bp 
Protein Length458 aa 
Translation table11 
GC content65% 
IMG OID641267484 
Productpotassium transporter peripheral membrane component 
Protein accessionYP_001532912 
Protein GI159044118 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG0569] K+ transport systems, NAD-binding component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.0202479 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones26 
Fosmid unclonability p-value0.0449671 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGGTCA TCATTTGTGG GGCAGGGCAG GTGGGCTGGC AGATCGCCCG CCACCTCGCG 
GGGGAGCGTA ACGACGTCAC CGTCGTGGAC AACAACCCCG AACTTGTCCG CCGGGCCACC
GACACGCTCG ACGTGCAGGG AATCACCGGC TTTGCGTCCT ACCCGGACGT GCTGACTTCC
GCCGGGGCGA ACGACGCCGA CATGATCATC GCCGCGACCT TCTCGGACGA GGTCAACATG
GTGATCTGCC AGATCTCCCA TTCGATCTTC GAGATCCCGC GCAAGATCGC CCGACTGCGC
TCCCAAAGCT ACCTCACGGC GATCTATTCC GACCTCTACC GGCGCGATCA CCTGCCGATC
GACGTGGTGA TCAGCCCCGA ACGCGAAGTG GCCGAGGCCG CGTTGAAACG CCTCGCGGCC
CCCGCGGCCT TCGACACCGA GAAATTCCTC GGCGGCAAGG CAACGCTTCT GGGCATCTCG
CTCGATGCGG ACTGCCCTGT GCTCTCCACG CCCCTGCGGC AACTCACCGA CCTGTTCTCG
ACGCTCCATG CCATGGTCGT GGGCGTGCGG CGCAAGGGCA CGCTCTTCGT GCCCGACCCG
GGCGACCAGC TTTTCGCCGG GGATCAGATC TATATCTTCT GCAAGGATGA CGACCTCGAC
CGCACCCTCG AAGTGTTCGG CAAGACCACG CGCAAACAGG AACGCATCGT GCTCATCGGC
GGTGGCAATG TGGGTCTCAC CGTGGCCCGC ACACTCGAAA GCCGCGAATC CCGTGTCCGC
GTCAAGGTGA TAGAACGGGA TCGCAAACGC GCCGAGATCG CTGCCGACGC GCTGGAGCGG
ACCATCGTTC TCAATGGCGA CGGGTTGAAC GTCGATCTGC TGCGCGAGGC CAATATCGAA
CGCGCCGACG CGGTGCTGGC GATCACCGAT GACGACAAGA CCAACCTGCT GGCCGCCGTG
CGCGCCAAGT CCGAGGGCTG TCCGGTGGCG ATCTCGCTGG TCAACGACCC GACTCTCGTG
CCACTGTTGG GGCCCCTGAA CATCGACGCC TATATCAACC CGCGCGCCAC CACCGTCAGC
TCGATCCTGC GCCACGTCCG CCACGGCCGG GTGCGCACGG TCTATTCCAT CGGCAATGCC
GAGGCCGAAG TGATCGAGGC GCAAGTGCTC TCGACCTCGC CGCTCTCGGG GCAGGTGGTG
CGCGACGTGG GCTTCCCGGA GGGCGTGCTG CTGGCGGGCA TGCTCAAGGA TGGCAAGGTG
ATCCGCCCCA CGGGCAGCAC CCGCATCGAG GAAGGCGCGG TCATCGTGAT GTTCGCCTTG
GCCGAAGATG TGCCCGAGGT CGAGCGTCTG CTCCAGGTCT CGATCGACTT CTTCTGA
 
Protein sequence
MKVIICGAGQ VGWQIARHLA GERNDVTVVD NNPELVRRAT DTLDVQGITG FASYPDVLTS 
AGANDADMII AATFSDEVNM VICQISHSIF EIPRKIARLR SQSYLTAIYS DLYRRDHLPI
DVVISPEREV AEAALKRLAA PAAFDTEKFL GGKATLLGIS LDADCPVLST PLRQLTDLFS
TLHAMVVGVR RKGTLFVPDP GDQLFAGDQI YIFCKDDDLD RTLEVFGKTT RKQERIVLIG
GGNVGLTVAR TLESRESRVR VKVIERDRKR AEIAADALER TIVLNGDGLN VDLLREANIE
RADAVLAITD DDKTNLLAAV RAKSEGCPVA ISLVNDPTLV PLLGPLNIDA YINPRATTVS
SILRHVRHGR VRTVYSIGNA EAEVIEAQVL STSPLSGQVV RDVGFPEGVL LAGMLKDGKV
IRPTGSTRIE EGAVIVMFAL AEDVPEVERL LQVSIDFF