| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1565 |
|---|
| Symbol | |
|---|
| ID | 5712709 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | + |
|---|
| Start bp | 1628799 |
|---|
| End bp | 1631282 |
|---|
| Gene Length | 2484 bp |
|---|
| Protein Length | 827 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 641267480 |
|---|
| Product | acylase precursor |
|---|
| Protein accession | YP_001532908 |
|---|
| Protein GI | 159044114 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2366] Protein related to penicillin acylase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.0134254 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 0.042074 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGGCGGA TCCTGAAATG GATGTTCCGG CTTTTCGTGG GGGCATTGAT CAGCCTCGGC
GTCGCACTCG TGCTGGTCTA TTACTTCGCG TCGCGCTCGA TCCCCGATTA CGATGGCAGC
TATGCGCTCG CGGGCGTTTC GGCCCCGGTG GAGATCGTGC GCGACACCCA TAACATCCCG
CATATCTTCG GGCAGACCGA CGCCGACAGC TTCTTCGGCC TGGGCTTTGT CCATGCCCAG
GACCGGCTGT GGCAGATGCT GATGTTCCGG CGCACGGCCC AGGGGCGGTT GTCGGAGCTT
TTCGGGGCGC GGACCCTGCA GATCGACGAC CTGCTGCGAC GGTTCGATTT CTATCGACTG
GCCCAGGCGT CGATCGACGA TCTTCGTCCG GAGACGCAAG CGGCGCTGGA GGCCTATGCT
GCCGGTGTGA ATGCCTGGAT CGCGGAGGTC AACAAGGGTG CGCTGGGGCG CGGTGCGCCG
GAGTTCTTCC TGTTCGAGCC AGAGATCGCG CCGTGGCAGC CCGCCGACAG CGTGGTGCTG
ATCAAGCTGA TGGCGCTGCA ACTGTCCTGG CATCTGCAGA CCGAGGTGCT GCGTGCGCGG
ATCTCCCTGG CCCTGCCGCC GGAGCGGGTG CGCGACATCC TGCCCGAGGC GCCGGGCACG
GGGCTGATCG ATTTGCCGGA ATATGCCGCC CTTGTGCCCG GCATCGACCG GCGACAGGCC
TTCGCAGGCG GCCCCCTGCC TCTGGATCCG CTGTCGCCCG TGGGCCCGCG CGCGCTTGCC
GGGGCCTCGA ACGCCTGGGC GGCAGCCCCG AGCCGGTCGG CGGCGGGCGG CACGCTTCTG
GCCAATGATC CGCATCTGGA ATTCACCGCC CCCTCGCAAT GGTACCTCGC GCGGCTCGAC
CTGGGCGCGG GCGGTGTCAT CGGGGGCACG GTGCCGGGGA TCCCGGCGGT CCTGACAGGG
CGGAACGCGT TTCTCGGCTG GGGGCTGACC TCCAGCTACG CGGATGATCA GGACCTGGTG
ATCGAGCAGC TCAACCCGGA CAATCCGGGC GAATACCTGA CCCCGGACGG GTTCAAACCC
TTCGAGAGCC GCCGCACGGT GATCGAGGTA GCCGATGCCG CGCCGGTGAC GATCACCCTG
CGCTGGACCG AGAACGGGCC GGTGATCCCG CGCACCCACT ACAACCTCGG GGCGGTGACG
CCGGAGGGAC ATGTGGCGGC GTTGAAATGG ACCGCGCTGA GCGATGCGGA CACCTCCATG
GATGCGGCGA TCGCGCTGAT GGCGGCGCGC AATGTCGACG AGGGGATCAA GGCCGGGCGC
AGTTTCGTGG CCCCGGCGCA GAACCTGACC CTGGCTGACC GGGAGCGGAT CGCGTTTCAG
ACCGTGGGCG CCCTGCCCCG GCGCGCGGCG GCCCATCAGA GCCTCGGACG ACTGCCGGCG
CCGGGCTGGC GGGTTCAGAA CCGGTGGCAG GGCACGCTGG GCTTTGTCGC GAATCCGCAG
GTGATCGACC CGCCCGGGGG CCTGTTGGGC AATACCAACA ACAAGGTGAT CGACCGGCCC
TTCCCGTTGC ACATGTCGTT CGACTGGGGC GATACCCAGC GCATCCAGCG CTGGGAGCGA
CTGATGTCCG CGCGGCAGGT GCATACGCGG GAGAGTTTCA TCGAGGCGCA GCTGGACACC
GTGAGCCAGG GGGCGCGGGT GCTGCTGCCG CTGGTGGCGC GGGAGTTGTG GTTCTCCGAA
GAAGCGGCCC CCGAGGGCAG CGAGGCGGCG TTGCGGCGGC GGGCGCTGGA CCTGCTGGCG
GAGTGGAACG GCGAGATGAG CGAGCATCTG CCCGAGCCGC TGATCTACAC CGCCTGGATG
CGTGCGCTGC AGGAGCGGCT GATCCGGGAT GAGCTGGGCC CGCTGGCGGA TGAATTCGAC
CGGCCGCAGG TGCTGTTTCT GGAGCGGGTG TTCCGGGACG TGGACGGGGC GGCGGTCTGG
TGCGACGTGG TCCAGACGAG CGCTGTGGAG GACTGCACGC TGCAGGCGCG CCGGGCGCTG
GACGATGCGC TGCTGGAGCT GACGGAGCGG TTCGGCAGCG CGGTGGAGGG CTGGCGCTGG
GGCGATGCAC ACCAGGCGAC CCATGACCAT CCGGTGCTGG GGGATGCGCC ATTTCTAGGG
CCGATCGTGA ACCTGCGCCA GTCGACGAGC GGCGGGGACA CGACGCTGAT GCGCGGGCTG
ACGGCAGGGA CCGGGGCGAA CCCTTACCGC AACACTCATG GGGGCGGATA TCGGGGGGTC
TACGACTTCG CCGATCCCGA CAGTTCGGTG TTCATCATCT CCACCGGGCA GTCGGGCCAT
CCCCTGTCGC GGCATTACGA CGATCTGGGG GAGCTATGGC GGCGGGGCGA ATACATCCCG
ATGACACTGG ATCCGGAGCT TGCCCGGGCC GGAGCGAATG GGGTGACACT TCTCTACCCC
GACCTCGCCG TTGCGCGGCC CTGA
|
|---|
| Protein sequence | MGRILKWMFR LFVGALISLG VALVLVYYFA SRSIPDYDGS YALAGVSAPV EIVRDTHNIP
HIFGQTDADS FFGLGFVHAQ DRLWQMLMFR RTAQGRLSEL FGARTLQIDD LLRRFDFYRL
AQASIDDLRP ETQAALEAYA AGVNAWIAEV NKGALGRGAP EFFLFEPEIA PWQPADSVVL
IKLMALQLSW HLQTEVLRAR ISLALPPERV RDILPEAPGT GLIDLPEYAA LVPGIDRRQA
FAGGPLPLDP LSPVGPRALA GASNAWAAAP SRSAAGGTLL ANDPHLEFTA PSQWYLARLD
LGAGGVIGGT VPGIPAVLTG RNAFLGWGLT SSYADDQDLV IEQLNPDNPG EYLTPDGFKP
FESRRTVIEV ADAAPVTITL RWTENGPVIP RTHYNLGAVT PEGHVAALKW TALSDADTSM
DAAIALMAAR NVDEGIKAGR SFVAPAQNLT LADRERIAFQ TVGALPRRAA AHQSLGRLPA
PGWRVQNRWQ GTLGFVANPQ VIDPPGGLLG NTNNKVIDRP FPLHMSFDWG DTQRIQRWER
LMSARQVHTR ESFIEAQLDT VSQGARVLLP LVARELWFSE EAAPEGSEAA LRRRALDLLA
EWNGEMSEHL PEPLIYTAWM RALQERLIRD ELGPLADEFD RPQVLFLERV FRDVDGAAVW
CDVVQTSAVE DCTLQARRAL DDALLELTER FGSAVEGWRW GDAHQATHDH PVLGDAPFLG
PIVNLRQSTS GGDTTLMRGL TAGTGANPYR NTHGGGYRGV YDFADPDSSV FIISTGQSGH
PLSRHYDDLG ELWRRGEYIP MTLDPELARA GANGVTLLYP DLAVARP
|
|---|
| |