| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1540 |
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| Symbol | |
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| ID | 5713197 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | + |
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| Start bp | 1601019 |
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| End bp | 1602053 |
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| Gene Length | 1035 bp |
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| Protein Length | 344 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 641267455 |
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| Product | protease |
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| Protein accession | YP_001532883 |
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| Protein GI | 159044089 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.107774 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 0.168358 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGCCTCT GGCTCCCCCT CGCGCTCTGC CTGCTGGCCC TGGTCGCACC CGCCCGGGCA
TCCGAACTGA CCGCCCCCGA AGAGCGCCTG ATTTCCCTGT TCGAGACGTC GCGCGCCGCC
GTGGTGTCGA TCACCACCGG CCAGCGCCGG GTCGATCCCT GGATGCGCCG GGCCGAAATC
GTGCCCAGCG GCTCCGGCTC GGGGTTCGTG TGGGACCGCG ACGGCCATGT GGTCACCAAC
GCCCATGTCA TCCGCGGCGC GGCCCGGGCG GATGTGCACA TGGCCGACGG GCGCGTGCTG
CCCGCCCGGC TGGTGGGCAC GGCCCCGCAA TACGACCTCG CGGTGCTGCG CGTCGATCTC
GGCACGCGCC GTCCCGACCC GCTCCCCCTG GGGCGCAGCG ACGCGCTCCG CGTGGGTCAA
AGCGTGCTGG CCATCGGCAA TCCGTTCGGG CTGGACTGGA CGCTGACCAC GGGCATCGTC
TCGGCGCTGG AGCGCGAGAT CCCGCTGGGC ACCGGCACGA TCGAGGGGCT TATCCAGACC
GACGCGGCGA TCAATCCGGG CAATTCCGGC GGCCCGCTTC TGGACAGCTC CGGGCGGCTG
ATCGGCGTGA ACACCGCGAT CTTCAGCCCC TCGGGCTCCA GTGCCGGAAT CGGCTTTGCC
GTGCCCGTGG ACCGGGTCGC CCGCGTGGTG CCGCAACTCA TCGCCCGGGG CATGTATCGC
CCGCCGGTCC TCGGCATCCG TTTCGATCCG CGCATCGACG CGCTGGCCCG GCAGAACGGC
GTCGAAGGCG CCGTGATCCT CGCGATAGAA CCGGGCGGCC CCGCCGCCGC CGCAGGTCTG
CGCCCGGCCC GGCGGGATGG GGCGGGCTTT CTCGTGCCCG GCGACGTGAT CCAGCGCCTG
GCGGGCCGCC CCATCGCCAG CGGCAGCGAC CTGCGCAGCG TGCTCGACGA TTTCGACCCG
GGCACCGAGG TGACCCTCGA GGTCTGGCGC GACGGCACCC GGCGCGAGGT CCGCGTCACC
CTGGCCGCGC CCTGA
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| Protein sequence | MRLWLPLALC LLALVAPARA SELTAPEERL ISLFETSRAA VVSITTGQRR VDPWMRRAEI
VPSGSGSGFV WDRDGHVVTN AHVIRGAARA DVHMADGRVL PARLVGTAPQ YDLAVLRVDL
GTRRPDPLPL GRSDALRVGQ SVLAIGNPFG LDWTLTTGIV SALEREIPLG TGTIEGLIQT
DAAINPGNSG GPLLDSSGRL IGVNTAIFSP SGSSAGIGFA VPVDRVARVV PQLIARGMYR
PPVLGIRFDP RIDALARQNG VEGAVILAIE PGGPAAAAGL RPARRDGAGF LVPGDVIQRL
AGRPIASGSD LRSVLDDFDP GTEVTLEVWR DGTRREVRVT LAAP
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