| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1525 |
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| Symbol | |
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| ID | 5713182 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | - |
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| Start bp | 1586124 |
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| End bp | 1587143 |
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| Gene Length | 1020 bp |
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| Protein Length | 339 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 641267440 |
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| Product | HTH-type transcriptional regulator |
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| Protein accession | YP_001532868 |
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| Protein GI | 159044074 |
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| COG category | [K] Transcription |
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| COG ID | [COG4977] Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 0.199497 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCTTGC CTCCGCCAGA ACAGCCCGAC GCGCGCCGCC CGTCGCTTGG TCCGGTCGCC
AAGCCGAAGC GGTATGTCTT CGTGCTGCTG GAGAATTTCA CCATGCTGTG CTTCGCCTCG
GCGGTGGAGG CCTTGCGGAT CGCCAACCGG ATGGCGGGCG AGGCGCTCTA TGAGTGGCGG
CTGGCGGGCG AAGGGGGCGA GATCGCCTAT TGCTCGGCCG GGGTCGGCTT CAAGCTGGAC
ATGGATCTCG AAGAACTGAG CCGCGATGAC GTGGTGTTCC TGTGCGGCGG GATCGATGTG
AAATCGGCCT CGTCAAAGGC ATTGCTGAAC TGGGTACGGC GGGAGGCGCG GCGCGGCGTG
GTCACGGCGG GGCTGTGCAC GGCGGGCTAT ACGCTGGCCA AGGCGGGACT GCTGGATGGC
AGGCGCGCGA CGATCCACTG GGAGAACCAC GACAGCTTTC TCGAAGAATT CGAAGAGATT
GAGCTGACCA AGTCGGTCTT CGTGATGGAC GGGAACCGCT ACACCACGGC GGGGGGCACG
GCATCGATCG ACCTGATGCT GAAGATCATC GCCGACGACC ATGGGGAGGA TCTGGCCAAT
GCGGTGGCCG ACCAGCTGAT CTACACCAGC ATTCGCACCG ACCAGGACAC CCAGCGGCTG
TCCACGCCGA CGCGGATCGG GGTGCGCCAT CCGCGGCTGA GCAAGGTGAT CCAGATGATG
GAGGCCAATA TCGAAGAGCC GATCAGCCCG TCAGTTCTGG CCTCGGATAT CGGCATGAGC
ACGCGGCAGC TGGAGCGGTT GTTCCGCCGC TACCTGAACC GCTCGCCCAA GCGATACTAC
ATGGAATTGC GGTTGCAGAA GGCGCGCAAC CTGTTGATGC AGACGGATAT GAGCGTGATC
AACGTCGCAC TTGCCTGCGG CTTCACCTCG CCCTCGCATT TCTCCAAATG CTACCGGTCG
CAATACAATA CCACCCCTTA CCGCGAACGC GGGTCGCAGG CCGGGCGGCT GTCGGTTTGA
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| Protein sequence | MTLPPPEQPD ARRPSLGPVA KPKRYVFVLL ENFTMLCFAS AVEALRIANR MAGEALYEWR
LAGEGGEIAY CSAGVGFKLD MDLEELSRDD VVFLCGGIDV KSASSKALLN WVRREARRGV
VTAGLCTAGY TLAKAGLLDG RRATIHWENH DSFLEEFEEI ELTKSVFVMD GNRYTTAGGT
ASIDLMLKII ADDHGEDLAN AVADQLIYTS IRTDQDTQRL STPTRIGVRH PRLSKVIQMM
EANIEEPISP SVLASDIGMS TRQLERLFRR YLNRSPKRYY MELRLQKARN LLMQTDMSVI
NVALACGFTS PSHFSKCYRS QYNTTPYRER GSQAGRLSV
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