Gene Dshi_1522 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDshi_1522 
Symbol 
ID5713179 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDinoroseobacter shibae DFL 12 
KingdomBacteria 
Replicon accessionNC_009952 
Strand
Start bp1582914 
End bp1584101 
Gene Length1188 bp 
Protein Length395 aa 
Translation table11 
GC content66% 
IMG OID641267437 
Productputative periplasmic ligand-binding protein 
Protein accessionYP_001532865 
Protein GI159044071 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones31 
Fosmid unclonability p-value0.371953 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAATCGC TGCTTCTCGC CTCCGTGGCG ACCGTGGCCA TGGCGACCTT CGCCGCCGCG 
CAATCGAACG ACATCAAGAT CGGTATCTCG GTGGGCTTCA CCGGGCCGCT GGAATCGCTG
GCGCCGCCCA TGGCGATGGG GGCCGAGATG GCGATGAAGG AAGTCTCCGA CAGCGGATTG
CTGCTTGGTG GATCCACGGT CACGCCGGTC CGGGCCGACA GCACCTGCAT CGATGCCGGT
GCGGCGACCT CTGCCGCCGA GCGGCTGATC ACCTCCGACG GGGTGAAGGG CATAATGGGG
GCGATGTGCT CCGGGGCGAC GGGCGCGATC CTGTCCAACG TGGCGATGCC GAACGGAGTT
GTGATGATCT CGCCCTCGGC CACCTCGCCG GCCCTGTCGA CGGTCGAAGA CAACGGCCTG
TTCTTCCGCA CGGCACCCTC GGATGCGCGT CAGGGTGTGG TGATGACCGA GATCATCATG
GATCGCGGCT TCAAGGAAGT GGCGGTTACC TACACCAACA ACGACTACGG CAAGGGGCTC
GCGGACAGCT TCGCCGCGGC CTTCGAGGAG GCGGGCGGCA CCGTGACTCT CGTGGCGGCC
CATGAGGACG GCAAGGCGGA TTATTCCGCC GAGGTCGGCG CGCTGGCCTC TGCGGGCGGC
GAGGTGCTGG TCGTGGCGGG CTACGTGGAC CAGGGCGGGT CGGGCATCAT CCAGGCCGCG
CTCGACACCG GTGCGTTCGA CACCTTCGTG CTGCCGGATG GCATGGTCTC CGTCGCGCTG
GAGGAAAACT TCGGGTCCGA CATCGACGGA TCCTTCGGGC AGAACCCGGG CACCGACAGC
GACGGCAAGC GGATCTATGC GGAGATGGTG GGCGATGCAT ACGATTCGAC CTCGCCCTTC
TCGGCCGAAA GCTACGATGC CGCGGCTCTG ATCATGCTGG CGATGCAAGC GGCAGGCTCC
GCCGAGCCGG GCGACTACAA GGATCACGTG ATGGACGTGG CCAACGCGCC GGGCGAAGAG
ATTTTGCCGG GTGAGCTGGC AAAAGGCCTC AAGATCCTCG CCGAAGGGGG CGAGATCGAC
TATGTCGGCG CCTCGGCGGT GGAGCTGATC GGGGGCGGCG AATCCGCGGG CAATTACCGC
GAGATGGAAA TGAAGGACGG CAAGGTCACG ACTGTCCGGT TCCGCTGA
 
Protein sequence
MKSLLLASVA TVAMATFAAA QSNDIKIGIS VGFTGPLESL APPMAMGAEM AMKEVSDSGL 
LLGGSTVTPV RADSTCIDAG AATSAAERLI TSDGVKGIMG AMCSGATGAI LSNVAMPNGV
VMISPSATSP ALSTVEDNGL FFRTAPSDAR QGVVMTEIIM DRGFKEVAVT YTNNDYGKGL
ADSFAAAFEE AGGTVTLVAA HEDGKADYSA EVGALASAGG EVLVVAGYVD QGGSGIIQAA
LDTGAFDTFV LPDGMVSVAL EENFGSDIDG SFGQNPGTDS DGKRIYAEMV GDAYDSTSPF
SAESYDAAAL IMLAMQAAGS AEPGDYKDHV MDVANAPGEE ILPGELAKGL KILAEGGEID
YVGASAVELI GGGESAGNYR EMEMKDGKVT TVRFR