Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dshi_1522 |
Symbol | |
ID | 5713179 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dinoroseobacter shibae DFL 12 |
Kingdom | Bacteria |
Replicon accession | NC_009952 |
Strand | - |
Start bp | 1582914 |
End bp | 1584101 |
Gene Length | 1188 bp |
Protein Length | 395 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 641267437 |
Product | putative periplasmic ligand-binding protein |
Protein accession | YP_001532865 |
Protein GI | 159044071 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 28 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 31 |
Fosmid unclonability p-value | 0.371953 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAATCGC TGCTTCTCGC CTCCGTGGCG ACCGTGGCCA TGGCGACCTT CGCCGCCGCG CAATCGAACG ACATCAAGAT CGGTATCTCG GTGGGCTTCA CCGGGCCGCT GGAATCGCTG GCGCCGCCCA TGGCGATGGG GGCCGAGATG GCGATGAAGG AAGTCTCCGA CAGCGGATTG CTGCTTGGTG GATCCACGGT CACGCCGGTC CGGGCCGACA GCACCTGCAT CGATGCCGGT GCGGCGACCT CTGCCGCCGA GCGGCTGATC ACCTCCGACG GGGTGAAGGG CATAATGGGG GCGATGTGCT CCGGGGCGAC GGGCGCGATC CTGTCCAACG TGGCGATGCC GAACGGAGTT GTGATGATCT CGCCCTCGGC CACCTCGCCG GCCCTGTCGA CGGTCGAAGA CAACGGCCTG TTCTTCCGCA CGGCACCCTC GGATGCGCGT CAGGGTGTGG TGATGACCGA GATCATCATG GATCGCGGCT TCAAGGAAGT GGCGGTTACC TACACCAACA ACGACTACGG CAAGGGGCTC GCGGACAGCT TCGCCGCGGC CTTCGAGGAG GCGGGCGGCA CCGTGACTCT CGTGGCGGCC CATGAGGACG GCAAGGCGGA TTATTCCGCC GAGGTCGGCG CGCTGGCCTC TGCGGGCGGC GAGGTGCTGG TCGTGGCGGG CTACGTGGAC CAGGGCGGGT CGGGCATCAT CCAGGCCGCG CTCGACACCG GTGCGTTCGA CACCTTCGTG CTGCCGGATG GCATGGTCTC CGTCGCGCTG GAGGAAAACT TCGGGTCCGA CATCGACGGA TCCTTCGGGC AGAACCCGGG CACCGACAGC GACGGCAAGC GGATCTATGC GGAGATGGTG GGCGATGCAT ACGATTCGAC CTCGCCCTTC TCGGCCGAAA GCTACGATGC CGCGGCTCTG ATCATGCTGG CGATGCAAGC GGCAGGCTCC GCCGAGCCGG GCGACTACAA GGATCACGTG ATGGACGTGG CCAACGCGCC GGGCGAAGAG ATTTTGCCGG GTGAGCTGGC AAAAGGCCTC AAGATCCTCG CCGAAGGGGG CGAGATCGAC TATGTCGGCG CCTCGGCGGT GGAGCTGATC GGGGGCGGCG AATCCGCGGG CAATTACCGC GAGATGGAAA TGAAGGACGG CAAGGTCACG ACTGTCCGGT TCCGCTGA
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Protein sequence | MKSLLLASVA TVAMATFAAA QSNDIKIGIS VGFTGPLESL APPMAMGAEM AMKEVSDSGL LLGGSTVTPV RADSTCIDAG AATSAAERLI TSDGVKGIMG AMCSGATGAI LSNVAMPNGV VMISPSATSP ALSTVEDNGL FFRTAPSDAR QGVVMTEIIM DRGFKEVAVT YTNNDYGKGL ADSFAAAFEE AGGTVTLVAA HEDGKADYSA EVGALASAGG EVLVVAGYVD QGGSGIIQAA LDTGAFDTFV LPDGMVSVAL EENFGSDIDG SFGQNPGTDS DGKRIYAEMV GDAYDSTSPF SAESYDAAAL IMLAMQAAGS AEPGDYKDHV MDVANAPGEE ILPGELAKGL KILAEGGEID YVGASAVELI GGGESAGNYR EMEMKDGKVT TVRFR
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