| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1518 |
|---|
| Symbol | |
|---|
| ID | 5713175 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | - |
|---|
| Start bp | 1579869 |
|---|
| End bp | 1580879 |
|---|
| Gene Length | 1011 bp |
|---|
| Protein Length | 336 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 641267433 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001532861 |
|---|
| Protein GI | 159044067 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0559] Branched-chain amino acid ABC-type transport system, permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 36 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 0.442526 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACTTCC TCAACGCCCT CGTGGCTTTC CTCAACTTCG TTGTCGTCCC CGCCACCGCC
TATGGGAGCC AACTGGCGCT CGGCGCGCTC GGTGTCACGC TGATCTACGG GATCCTGCGG
TTTTCCAACT TCGCCCATGG CGACACGATG GCCTTCGGGA CCATGGCGAC GATCCTGTTC
ACCTGGGCTT TCCAGTCCAT TGGGATCAGC CTCGGGCCCC TGCCCACGGC TCTGCTCGCC
CTGCCCTTCG GCATCCTGGT GACGGGCGCG CTGCTGGTGG GGACCGACCG GTTGGTATAC
AAATTCTACC GCCAGCAGAA GGCCGTACCG GTGATCTTCG TGATCGCCTC GCTCGGCGTG
ATGTTCGTCA CCAACGCCCT TGTGCGCTTC ATCATCGGCC CGGACGACCA GCGCTTTGCC
GATGGCGAGC GGTTCATCAT CTCGGCGCGG GAGTTCCGCA ACCTGACGGG CCTCGACGAG
GGGCTGGCCC TGCGCACGAC CCAGGGCCTG ACGGTGGTGA CGGCGGTCAT TGTGGTGGCG
CTGCTCTTCT GGTTTCTGAA CCGGACGCGC ACGGGCAAAT CGATGCGGGC GTTTTCCGAC
AACGAGGATC TGGCGCTGCT GTCCGGCATC AACCCCGAAC GGGTGGTGAT GGTGACCTGG
TTGATCGTGG CGGCGCTGGC CACGGTGGCG GGCACGCTTT ACGGGCTCGA CAAGTCGTTC
AAACCCTTCA CCTATTTCCA ACTGTTGCTG CCGATTTTCG CCGCCGCCAT CGTCGGGGGG
CTGGGGAGTC CGCTGGGCGC CATCGCGGGC GGGTTCGTGA TCGCCTTCTC GGAAGTCACG
ATCACCTACG CGTTCAAGAA GGTGCTGGAA TACCTGCTGC CCGAGGCGCT GGAGCCGGAC
GGGCTCGTGC AGTTGCTGTC CACGGATTAC AAGTTCGCGG TCAGTTTCGC CATCCTGATC
ATTGTGCTGC TGTTCAAACC CACGGGGCTG TTCAAGGGGA AATCCGTATG A
|
|---|
| Protein sequence | MDFLNALVAF LNFVVVPATA YGSQLALGAL GVTLIYGILR FSNFAHGDTM AFGTMATILF
TWAFQSIGIS LGPLPTALLA LPFGILVTGA LLVGTDRLVY KFYRQQKAVP VIFVIASLGV
MFVTNALVRF IIGPDDQRFA DGERFIISAR EFRNLTGLDE GLALRTTQGL TVVTAVIVVA
LLFWFLNRTR TGKSMRAFSD NEDLALLSGI NPERVVMVTW LIVAALATVA GTLYGLDKSF
KPFTYFQLLL PIFAAAIVGG LGSPLGAIAG GFVIAFSEVT ITYAFKKVLE YLLPEALEPD
GLVQLLSTDY KFAVSFAILI IVLLFKPTGL FKGKSV
|
|---|
| |