| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1514 |
|---|
| Symbol | |
|---|
| ID | 5713171 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | + |
|---|
| Start bp | 1576962 |
|---|
| End bp | 1577585 |
|---|
| Gene Length | 624 bp |
|---|
| Protein Length | 207 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 641267429 |
|---|
| Product | putative thiamine monophosphate synthase |
|---|
| Protein accession | YP_001532857 |
|---|
| Protein GI | 159044063 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0352] Thiamine monophosphate synthase |
|---|
| TIGRFAM ID | [TIGR00693] thiamine-phosphate pyrophosphorylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 0.176973 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 34 |
|---|
| Fosmid unclonability p-value | 0.661012 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCGACA CGCCCGAGCA GCCGCAGCTT TACCTCGTCA CCCCGCCGGA GATCGAATTA
TCCAGTTTCC CCGGCACGCT CGCCCGTCTT CTGGACGGGG CCGAGATTGC CTGTGTGCGG
CTGGCGCTGT CCACCCGCGA CGAGGATCGC ATCGCACGCG CGGCGGATGC CTGCCGCGAG
GTGGCCCATG CCCGGGATGT GCCGCTGGTG ATCGACACCC ATTTCCGCAT GGTCGAGCGG
CTGGGCCTTG ATGGCGTCCA TCTCGGCGAC GGCGCGCGCT CGGTGCGCAA GGTCCGCAAG
GAGATCGGGG CCGAGGCCGT GGTCGGCGCC CATTGCGGTG CCTCCCAGCA TGACGGCATG
ACCGCAGGCG AGGCCGGGGC CGATTACGTT GCCTTCGGCC CGGTCGCAGC CAGCCTGACC
GGCGCAGGCG AGGTGGCGGA GGCCGATCTT TTTGCCTGGT GGTCGCAGAT GATCGAGTTG
CCCGTGGTGG CCGAAGGCAA CCTGACCACC GCCGCGGTCG AAACCCTCGC ACCGCTGACG
GATTTTTTCG CCCTGGGCGA AGAGATCTGG GGCACGGACG ACCCGCTGGA GGCCCTGCGC
ACCCTCACCG CGCCCCTGGG CTGA
|
|---|
| Protein sequence | MADTPEQPQL YLVTPPEIEL SSFPGTLARL LDGAEIACVR LALSTRDEDR IARAADACRE
VAHARDVPLV IDTHFRMVER LGLDGVHLGD GARSVRKVRK EIGAEAVVGA HCGASQHDGM
TAGEAGADYV AFGPVAASLT GAGEVAEADL FAWWSQMIEL PVVAEGNLTT AAVETLAPLT
DFFALGEEIW GTDDPLEALR TLTAPLG
|
|---|
| |