| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1509 |
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| Symbol | ligA |
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| ID | 5712688 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | + |
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| Start bp | 1568730 |
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| End bp | 1570955 |
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| Gene Length | 2226 bp |
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| Protein Length | 741 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 641267424 |
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| Product | DNA ligase |
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| Protein accession | YP_001532852 |
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| Protein GI | 159044058 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
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| TIGRFAM ID | [TIGR00575] DNA ligase, NAD-dependent |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.75863 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 0.655718 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCGAAGG ACGGTCCTTT CCGTTTCGGC GCCCGCGGGC TCTGGACCTC GGGGCAAGCG
CTGCTATTCC TTGACCCGCT GGGAGTGTGG ATGGGGACCC CGATGAACGA CACGTATGTT
GCGGTCGAAG CGCTGAGCGA GGCGGCGGCG CGGAAAGAGC TTGCGCGCCT GTCGGAGCTG
CTCGCCCGTG CCAACGCGGA ATACCACCGC GACGATGCGC CCAGCCTGTC GGATGCCGAT
TACGACGCGC TCAAACAGCG CAACGCGGCG ATCGAGGCGC GTTTTCCCGA CCTGAAACGA
GGTGACAGCC CCAGCGACCA GGTCGGCGCC GCACCCTCGG ACACGTTTTC GAAGGTCACC
CACGCGGTGC GGATGCTGTC GCTGGCAAAC GCCTTTTCCG ACGAGGATAT CCGGGACTTC
GACACCCGCA TCCGCCGCTT CCTCGGGCTG GCCGAAGACG CCCCGCTCGC CTACACCGCC
GAGCCCAAGA TCGACGGTCT GTCCCTGTCG CTGCGCTATG AACACGGCAC GCTGGTGCAG
GCCGCCACCC GGGGCGACGG GGCCGTGGGC GAGAACGTGA CCGCCAATGC GCGCACCATC
GACGACATCC CGCACAGGCT CGACGGGGCG CCGGAAGTGC TGGAAGTGCG CGGCGAGGTC
TATATGTCGC ACGCCGATTT CGCCGAGCTG AATGCGCGCC AGGCCGAGAC CGGGGGCAAG
ACCTTCGCCA ATCCGCGCAA CGCGGCCGCC GGGTCGCTGC GCCAGCTCGA TGCCGAGATC
ACCCGCGCGC GGCCCCTGAA ATTCTTCGCC TATGCCTGGG GGGAGATCTC CGCCCCGCTT
GCCGAGACCC AGACCGAAAC ACTGGCGCGG TTTCGCGAAT TCGGGTTCAC GATAAACCCC
TTGACCGTGC GCTGCGAGAC CCCCGAAGAT ATGCTCGCCC AGTACCGCGC GATCGAGGCG
CAGCGTGCCA CGCTGGGCTA TGACATCGAC GGGGTGGTCT ACAAGCTCGA CGATCTCGAC
CTGCAGCGCC GGCTCGGGTT CCGTTCCACC ACGCCCCGCT GGGCGATTGC CCACAAGTTT
CCGGCCGAGC TCGCCTGGAC CCGGCTGGAG GCGATCGACA TCCAGGTCGG GCGCACCGGC
GCTCTCAGCC CCGTGGCGCG GCTCGCCCCG GTCACCGTGG GCGGCGTGGT GGTGTCGAAC
GCCACCCTGC ATAACGAGGA CTACATCCAG GGCCGCGACA ACACCGGCGC GCCGATCCGG
TGGGGGACGG ATATCCGGGT GGGCGACTGG GTGCAGGTCT ACCGCGCGGG CGATGTGATC
CCCAAGATCA GGGATGTGGA TCTGTCGCGC CGCCCCGAAG GCGCAGCCCC CTTCGACTTT
CCCACGACCT GTCCCGAATG CGGCTCCGAC GCGCCGCGGG AGCCCGGCGA TGCGGTGCGC
CGGTGCAGCG GTGGGTTGAT CTGCCCGGCC CAGGCGGTCG AGAAGCTGAA GCATTTCGTC
TCCCGCGGGG CGCTGGATAT CGACGGGCTG GGCGCCAAGC AGGTGGAGCA GTTCTACCGC
GACGGCTGGA TCGCGGAGCC TGCGGATATC TTCACCCTGC GCGCGCGCTT CGGCCAGGGG
TTGCAGCAGC TCAAGAACCG CGAGGGCTGG GGCGACAAGA GCGCCGAGAA CCTGTTCCGT
GCCATCGATA CCGCGCGCAC GGCGCCTTTT GCCAAGGTCC TGTTCGGCCT CGGCATCCGC
CATATCGGCG AGAGCGCCTC GTCGCTTCTG GCCAATCACT ACCTGACCAT GGAGGCGCTG
TTGGCCGCGG TCGACGCGGC CGTGGACGAG ACCAGCGATG CCTGGGCGGA TCTGCTCAAT
ATCGATGGGG TGGGGGAGGT GATGGCCCGC GCCCTGGTCA CCACCCTGAC ACAAGAGGCG
GAGCGCGCCT CTGTCAACCG GTTGCTGGCG CAGATCGATC CGGCCCCGGC GACGCCGCCG
CAGGTCGGGG ACAGTCCCGT GGCGGGCAAG ACGCTGGTCT TCACCGGGAC GCTGGAGACC
ATGTCGCGGG CCGAGGCCAA GGCCACCGCC GAGGCACTGG GGGCCAAGGT CGCGGGGTCG
GTTTCGGCGA AGACAGACCT TCTGATCGCC GGGCCGGGGG CCGGTTCCAA GGCCACCAAG
GCCGAAGCCC TGGGCATCGA GGTGATCGAC GAGGACGCCT GGCGCGTTCT GGCGGGGCTT
GCGTGA
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| Protein sequence | MSKDGPFRFG ARGLWTSGQA LLFLDPLGVW MGTPMNDTYV AVEALSEAAA RKELARLSEL
LARANAEYHR DDAPSLSDAD YDALKQRNAA IEARFPDLKR GDSPSDQVGA APSDTFSKVT
HAVRMLSLAN AFSDEDIRDF DTRIRRFLGL AEDAPLAYTA EPKIDGLSLS LRYEHGTLVQ
AATRGDGAVG ENVTANARTI DDIPHRLDGA PEVLEVRGEV YMSHADFAEL NARQAETGGK
TFANPRNAAA GSLRQLDAEI TRARPLKFFA YAWGEISAPL AETQTETLAR FREFGFTINP
LTVRCETPED MLAQYRAIEA QRATLGYDID GVVYKLDDLD LQRRLGFRST TPRWAIAHKF
PAELAWTRLE AIDIQVGRTG ALSPVARLAP VTVGGVVVSN ATLHNEDYIQ GRDNTGAPIR
WGTDIRVGDW VQVYRAGDVI PKIRDVDLSR RPEGAAPFDF PTTCPECGSD APREPGDAVR
RCSGGLICPA QAVEKLKHFV SRGALDIDGL GAKQVEQFYR DGWIAEPADI FTLRARFGQG
LQQLKNREGW GDKSAENLFR AIDTARTAPF AKVLFGLGIR HIGESASSLL ANHYLTMEAL
LAAVDAAVDE TSDAWADLLN IDGVGEVMAR ALVTTLTQEA ERASVNRLLA QIDPAPATPP
QVGDSPVAGK TLVFTGTLET MSRAEAKATA EALGAKVAGS VSAKTDLLIA GPGAGSKATK
AEALGIEVID EDAWRVLAGL A
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