| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1506 |
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| Symbol | mnmA |
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| ID | 5712685 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | - |
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| Start bp | 1566319 |
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| End bp | 1567473 |
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| Gene Length | 1155 bp |
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| Protein Length | 384 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 641267421 |
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| Product | tRNA-specific 2-thiouridylase MnmA |
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| Protein accession | YP_001532849 |
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| Protein GI | 159044055 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0482] Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain |
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| TIGRFAM ID | [TIGR00420] tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 0.279864 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 36 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTTCAG CGACAGCGTC CCTGACGCCT GCCCTCAACT CCCTTGGCTT TGCCAAACCG
CCCTCGGAGA CCCGCGTCGT CGTGGCGATG TCGGGCGGTG TCGACAGTTC TGTCGTCGCG
GCGGAGCTGG CCTGCGAAGG CTATGACGTG GTGGGCGTGA CGCTTCAGCT ATACGACCAC
GGCGCAGCTC TGGCCAAGAA AGGCGCCTGC TGCGCCGGGC GCGACATCCA CGACGCGCGC
CGGGTGGCCG AAGAGATGGG CTTCCCCCAT TACGTGCTGG ACTACGAGAA TACCTTTCGC
GAGGCGGTGA TCGACGAATT CGCCGACAGC TACCTCGGCG GCGCGACCCC GGTCCCGTGC
ATCCGCTGCA ACGAGCGGGT GAAGTTCAAG GACCTGCTGG AGACCGCCAG GGACCTGGAG
GCCGACTGCA TGGCCACCGG GCACTATATC CAGCGCAAGA TGGGTCCGGC CAAGGCGGAG
TTGCATTCGG CAGCGGACGC CAATCGTGAC CAGTCCTATT TTCTGTTCTC CACCACCCAG
GAGCAGCTCG ATTACCTGCG CTTCCCCCTC GGCCACCTGG CGTCGAAGGC CGAGACCCGC
GCGCTCGCGG CCAAGCACGG GCTGAGCGTG GCCGACAAAC CCGACAGCCA GGACATCTGT
TTCGTCCCCA ACGGCGACTA TGCCTCGGTG ATCGAGAAAC TGCGCCCCGG CGCGGGCGAG
CCGGGTGAGA TCGTGGATAT GGACGGGACC GTCCTGGGCG CCCACCGGGG CGTGATCCAC
TACACGATCG GGCAGCGGCG GGGGCTGGGC ATCGGCGGGC TGGAGACGCC GCTCTACGTG
GTCAAGCTCG ACCCCGACGC GCGCCGCGTG ATCGTCGGCC CGAAAGAGGC GCTCAGCACC
CGCCATGTGC CCCTGCGCGA GATCAACTGG CTGGGCGATG CCCCCCTCAG CAGCCGCGCC
GAATGGCCCA TCGCGGTGAA GGTCCGCTCC ACCCGTCCCC CGCGGGACGC GATCCTGCGC
CCGATCTCGG ACACGGAGGC GACGGTCGAG TTGCTCACAC CCGAGGAAGG GGTGTCTCCG
GGGCAGGCCT GCGTGTTTTA TGACCCGGAT GGCACGCGGA TCTTCGGGGG CGGCTGGATC
TGGCGGGGCG CGTGA
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| Protein sequence | MTSATASLTP ALNSLGFAKP PSETRVVVAM SGGVDSSVVA AELACEGYDV VGVTLQLYDH
GAALAKKGAC CAGRDIHDAR RVAEEMGFPH YVLDYENTFR EAVIDEFADS YLGGATPVPC
IRCNERVKFK DLLETARDLE ADCMATGHYI QRKMGPAKAE LHSAADANRD QSYFLFSTTQ
EQLDYLRFPL GHLASKAETR ALAAKHGLSV ADKPDSQDIC FVPNGDYASV IEKLRPGAGE
PGEIVDMDGT VLGAHRGVIH YTIGQRRGLG IGGLETPLYV VKLDPDARRV IVGPKEALST
RHVPLREINW LGDAPLSSRA EWPIAVKVRS TRPPRDAILR PISDTEATVE LLTPEEGVSP
GQACVFYDPD GTRIFGGGWI WRGA
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