| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1498 |
|---|
| Symbol | ecfE |
|---|
| ID | 5712677 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | + |
|---|
| Start bp | 1557041 |
|---|
| End bp | 1558378 |
|---|
| Gene Length | 1338 bp |
|---|
| Protein Length | 445 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 641267413 |
|---|
| Product | putative membrane-associated zinc metalloprotease |
|---|
| Protein accession | YP_001532841 |
|---|
| Protein GI | 159044047 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0750] Predicted membrane-associated Zn-dependent proteases 1 |
|---|
| TIGRFAM ID | [TIGR00054] RIP metalloprotease RseP |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.21525 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 37 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGGACCTTG TTGGACTGAT CCCCTCATTC GGCGGGCTCG CATTCACGAT CATTGCCTTC
ATCGTGGCGC TTTCCGTGAT CGTCGCGATC CATGAATACG GGCATTACAT CGTCGGCCGC
TGGTGCGGCA TCCATGCGGA GGTCTTCTCG CTGGGCTTCG GGCCGGTTCT GTACAAACGC
ACCGACCGCC GCGGCACCCA GTGGCAGGTG GCGGCGCTGC CCTTCGGGGG CTACGTGAAA
TTCCTCGGGG ATGCGGACGC GGCCAGCGGC AAGGACGGGG AGGGGATGTC CACCCTGTCG
GAGGCGGAGC TGGCGCGCAC CATGCATGGC GCGAAGTTGT GGAAACGGGC CGCGACCGTG
GCGGCGGGGC CGGTGTTCAA CTTCATCCTG TCCATCGTGA TCTTCGGCGG CATGATCCTG
TGGCAGGGCA CGGCGACGGA GCGGCCGACC ATCGGGGCGT TGACCGAGCT GCCCGTGGGG
GTGTCGGAGC TGGAGCGCGG GGACGTGATC ACCGCGATCG AGGGCGAGGC GACGCCGGAT
TACACCGCGC TCAACGCCTT GCGCGAGACC CTGCCGCGAG AGCCGTCGCT GACCTACACG
GTGGAGCGGG ACGGCAGCAC CCTGAACGTG CAGGGGCCGT TCATCATGCC GCCGCTGGTC
TCGGGCCTGC AGCCGCGCAG TGCCGCCATG GACCAGGGCT TCGAGGTCGG CGACGTGATC
ACCGCCATCG ACGGCACGCC GATCTACGCC TTCGAGGATC TGCGCGAGGC GGTGGAGGCC
TCGGCGGGCG CGGACATGGT GATGGCGGTC TGGCGCGACG GCGAGACGGT CGAGATCACG
GTCGCCCCGC GCCGGATGGA CCTGCCGCTG CCCGAAGGCG GGTTCGAGAC CCGGTGGCTG
ATCGGGATCA CAGGGGGGAT GTTCTTCGAG CCCGAAACCG TGACCCCGGG CCCGCTCATG
GCCCTGTGGC AGGGGGTGGA GCAGATGTGG TTCATCATCC GCTCGTCCCT GTCGGGGCTG
TGGCACATGA TTACTGGCGC GATCAGCACC TGCAACATCT CGGGGCCGAT CGGGATTGCC
GAGACCTCCG GCGCGGTGGC CTCGCAGGGG CTGGACCAGT TCATCTGGTT CATCGCGGTG
CTGTCGACGG CGGTGGGAAT GCTCAACCTC TTCCCGGTGC CGGTGCTCGA TGGCGGGCAC
CTGGTGTTTC ACGCCTATGA GGCGGTCACC GGAAAGCCGC CCAGCGACAA GGCACTGCGG
GTGATGATGA CCACCGGACT TGCGCTCCTG CTGACGCTGA TGGTGTTCGC GCTGAGCAAC
GATCTCTTCT GCCCCTGA
|
|---|
| Protein sequence | MDLVGLIPSF GGLAFTIIAF IVALSVIVAI HEYGHYIVGR WCGIHAEVFS LGFGPVLYKR
TDRRGTQWQV AALPFGGYVK FLGDADAASG KDGEGMSTLS EAELARTMHG AKLWKRAATV
AAGPVFNFIL SIVIFGGMIL WQGTATERPT IGALTELPVG VSELERGDVI TAIEGEATPD
YTALNALRET LPREPSLTYT VERDGSTLNV QGPFIMPPLV SGLQPRSAAM DQGFEVGDVI
TAIDGTPIYA FEDLREAVEA SAGADMVMAV WRDGETVEIT VAPRRMDLPL PEGGFETRWL
IGITGGMFFE PETVTPGPLM ALWQGVEQMW FIIRSSLSGL WHMITGAIST CNISGPIGIA
ETSGAVASQG LDQFIWFIAV LSTAVGMLNL FPVPVLDGGH LVFHAYEAVT GKPPSDKALR
VMMTTGLALL LTLMVFALSN DLFCP
|
|---|
| |