| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1482 |
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| Symbol | |
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| ID | 5712660 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | + |
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| Start bp | 1536841 |
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| End bp | 1538193 |
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| Gene Length | 1353 bp |
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| Protein Length | 450 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 641267396 |
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| Product | TRAP dicarboxylate transporter |
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| Protein accession | YP_001532825 |
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| Protein GI | 159044031 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component |
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| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.17779 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 0.355588 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCGGCG TGGAGCTGGC GCTCACGGGC TTTGCGCTGA TGCTGGGGGC GATTTTTTTG
CGGGTGCCGA TCGCGGTGGC CATGGGGCTT ACCGGGTTCA TCGGGACCTG GGTCGTGCTG
GGGCATCCCA ACGCGACCCT GAGCCAGATG AAGACGCTGA CCTATGACAC GTTTTCGAGC
TATTCGCTGT CCATCGTGCC GCTCTTCCTG CTGATGGGGC AGTTCGCCAC GAAGTCGGGC
ATGTCGGCGG CGCTGTTCCA GGCGGCGTCG GACTGGCTGG GGCACCGCAA GGGCGGGGTG
GCGATGGCAG CCGTGGGGGC CTGCGCGGGG TTCGGGGCGG TGTGCGGGTC GTCGCTGGCC
ACGGCTTCGA CCATGGGGCA GGTGGCCCTG CCGGAGATGA AGAAGCGCGG CTATTCCGAC
AGTCTCAGCA CCGGGGTGCT GGCGGCGGGG GGCACGCTGG GCATCCTGAT CCCGCCTTCG
GTGATCCTGG TGATCTATGC GATCCTGACC CAGCAGAACA TCGTCAAGAT GTTCATCGCC
GCGCTCATCC CGGGCATCAT CGCGGCCCTT GGCTACATGC TGACCGTGGC GATCTATGTG
CGCGTGAAAC CGGACGCGGC CACCACCGCG CCGCGCATTC CCATGGCCGA CCGGATGCGG
ACCCTGTGGC GGATCTGGCC GGTGGTGGTG ATCTTCGGTC TGGTGATGGG GGGCATTGCG
GGGGACTGGA ACTGGGCGCA GGACGGGGTG CAGGCGCTGT TCACGCCCAC CGAGGGCGCG
GCGGTGGGCG CGGTGGCCAC GGGGATCTAC GGCTGGGCCA CGGGGGGGTT GACCTGGAAA
GGGTTGCTCG AGTCGATCCT GGAGACCGCG CAGGCCTCGG CGATGATCTT CTTCATCGTG
CTGGGCGCGC AGCTCTTCAA TTCCTTCCTT GCGTTCACAC AGGCGCCGCA GCAGCTGGCC
GAATGGGTGA CGGCCCAGGG CTTCGCGCCG CTGGTGGTGC TGTCGGCGAT GCTGGTCTGC
TACCTGATCT TCGGTTGCGT GATGGACAGC CTGTCGATGA TCCTGCTGAC CATCCCGATC
TTCTTTCCCA TCGTCATGGC ACTGGATTTC GGCCTGACGC CCGAGCAGGC AGCGATCTGG
TTCGGCATTC TCGCGCTGAT CGTGGTGGAG GTCGGGCTGA TCACGCCGCC GGTGGGGATG
AACCTGTTCA TCATCAACTC CATGGCGCGC GACGTGCCCA TGGGCCGGAC CTATCGCGGG
GTGGCGCCCT TTGTCGCCTC GGACCTGGTG CGGGTGGTGA TCCTCGTGGC CTTTCCGGGG
ATCACGCTGT GGCTGGTCGG CGTGATGTTC TAG
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| Protein sequence | MSGVELALTG FALMLGAIFL RVPIAVAMGL TGFIGTWVVL GHPNATLSQM KTLTYDTFSS
YSLSIVPLFL LMGQFATKSG MSAALFQAAS DWLGHRKGGV AMAAVGACAG FGAVCGSSLA
TASTMGQVAL PEMKKRGYSD SLSTGVLAAG GTLGILIPPS VILVIYAILT QQNIVKMFIA
ALIPGIIAAL GYMLTVAIYV RVKPDAATTA PRIPMADRMR TLWRIWPVVV IFGLVMGGIA
GDWNWAQDGV QALFTPTEGA AVGAVATGIY GWATGGLTWK GLLESILETA QASAMIFFIV
LGAQLFNSFL AFTQAPQQLA EWVTAQGFAP LVVLSAMLVC YLIFGCVMDS LSMILLTIPI
FFPIVMALDF GLTPEQAAIW FGILALIVVE VGLITPPVGM NLFIINSMAR DVPMGRTYRG
VAPFVASDLV RVVILVAFPG ITLWLVGVMF
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