| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1475 |
|---|
| Symbol | gid |
|---|
| ID | 5712653 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | - |
|---|
| Start bp | 1528630 |
|---|
| End bp | 1529985 |
|---|
| Gene Length | 1356 bp |
|---|
| Protein Length | 451 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 641267389 |
|---|
| Product | tRNA (uracil-5-)-methyltransferase Gid |
|---|
| Protein accession | YP_001532818 |
|---|
| Protein GI | 159044024 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1206] NAD(FAD)-utilizing enzyme possibly involved in translation |
|---|
| TIGRFAM ID | [TIGR00137] tRNA:m(5)U-54 methyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.235557 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 0.0394946 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGAGA CCCTGCATAT CGTTGGCGGC GGCATGGCCG GATCCGAGGC CGCCTGGCAG
GCCGCGCAGA TGGGCGTGTC CGTGGTGATC CACGAGATGC GCCCCAAGGT CGGCACCTTC
GCCCACAAGA CCGGTCACCT GGCCGAGATG GTCTGTTCGA ACTCCTTCCG CTCCGACGAT
GACGAGCAGA ACGCGGTGGG CCTGCTGCAT TGGGAGATGC GCGCCGCGGG TGGGCTGATC
ATGGAGATGG CCGATGCCCA TGCGCTCCCG GCCGGCGGGG CGCTCGCCGT GGACCGGGAG
CCTTTCGCGG AGTCGGTGAC CGCACGGCTC CACGAGCACC CGAACATCCG CGTGGAAGGC
ACTGAAATCA CGTCGCTTCC CGCGGAGGGC AAGTGGATCA TAGCCACCGG TCCGCTGACC
TCCGGCGCGC TGGCCGAGGC GATCGCCGCC GAGACCGGGC AGGAAAGCCT GGCGTTTTTC
GACGCCATCG CACCGATCCT GTATTTCGAC AGTATCGACA TGACCAAGGC CTGGATGCAG
TCGCGTTACG ACAAGGGCGA GACCGAGGAA GAGCGCACCG CGTACCTCAA CTGCCCCATG
GATCGCGACC AGTACGAGGC ATTCATCGAC GCGCTGCTGG CCGCGGAGAA AACCGAGTTC
AAACCGGGCG AGACCGCCGG TTATTTCGAC GGCTGCCTGC CGATCGAGGT GATGGCCGAA
CGCGGGCGGG AGACATTGCG CCACGGGCCG ATGAAACCCG TGGGCCTGAC CAACCCGCAC
CAGCCCGACG TCAAGGCCCA TGCCGTAGTT CAACTTCGCC GGGATAACGC CCTGGGAACC
CTTTATAATA TCGTGGGTTT CCAGACCAAG ATGAAGTACG GCGCGCAGAA AGAAGTCCTG
CGCATGATCC CGGGGCTGGA GGAGGCCCGG TTTGCCCGGC TGGGCGGCAT TCACCGCAAT
ACGTTCATCA ACGCGCCCAC CTTGCTCGAT GACCAGATGC GGCTGCACTC GCGGCCCAAC
CTGCGTTTTG CGGGGCAGAT CACCGGAGTC GAGGGTTATG TGGAGAGTGC GGCGATGGGG
CTCTTGGCGG GGCGGATGGC TGCCGCCGAG ATCCTCGGCA CGCCGCTGGC CAGCCCGCCG
CAGGAGACCG CCATGGGCGC CCTGATCCAT CACATCACCG GGGGCGCGGA GGCTAAGACC
TTCCAGCCGA TGAATGTCAA TTTCGGGCTT TTCCCGCCGC TCGACGGGGT GCGCGGCGGG
CGGCGGGGCC GCAAGGAACG CTACAAGGGC TATACCGACC GCGCCAAGGC CGCCTGGCAG
GGCTGGCTGG GGCAGACGGC GCTGGCGGCG GAGTGA
|
|---|
| Protein sequence | MTETLHIVGG GMAGSEAAWQ AAQMGVSVVI HEMRPKVGTF AHKTGHLAEM VCSNSFRSDD
DEQNAVGLLH WEMRAAGGLI MEMADAHALP AGGALAVDRE PFAESVTARL HEHPNIRVEG
TEITSLPAEG KWIIATGPLT SGALAEAIAA ETGQESLAFF DAIAPILYFD SIDMTKAWMQ
SRYDKGETEE ERTAYLNCPM DRDQYEAFID ALLAAEKTEF KPGETAGYFD GCLPIEVMAE
RGRETLRHGP MKPVGLTNPH QPDVKAHAVV QLRRDNALGT LYNIVGFQTK MKYGAQKEVL
RMIPGLEEAR FARLGGIHRN TFINAPTLLD DQMRLHSRPN LRFAGQITGV EGYVESAAMG
LLAGRMAAAE ILGTPLASPP QETAMGALIH HITGGAEAKT FQPMNVNFGL FPPLDGVRGG
RRGRKERYKG YTDRAKAAWQ GWLGQTALAA E
|
|---|
| |