| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1452 |
|---|
| Symbol | ssuC2 |
|---|
| ID | 5712629 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | - |
|---|
| Start bp | 1511077 |
|---|
| End bp | 1511940 |
|---|
| Gene Length | 864 bp |
|---|
| Protein Length | 287 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 641267365 |
|---|
| Product | binding-protein-dependent transport systems inner membrane component |
|---|
| Protein accession | YP_001532795 |
|---|
| Protein GI | 159044001 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0600] ABC-type nitrate/sulfonate/bicarbonate transport system, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 0.100021 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCCGCCCT GCCCTTCCGC CCGAAAGATC GGCACCATGA TGATCCAGCC CTTCCTGATA
TCGCTCGCGG CCCGCCTCGG ACGCATTGGC GCCTTCCTGT GGTCGGGCTG GGCCGGGCTG
GCGGCGCTGG CGCTTCTCTT CGCCGCATGG CAGGCCGGGC ACGAGGCCTA CGGGCCGTTC
ATCCTCTCCG CGCCGCTCGA CACGATGGGC ACGGTCGGCG CTCTTGCAGT CGACCCGGCG
GCCTGGGAGA TCGCCGCGCT GACCCTGCAA CGCGCCCTCA GCGGGTTCTT CCTCGTGGCC
GCGGCCGGGA CCGCGCTCGG CGTGGCGGCG GGATACTTCC CGGCGATCCT GCGCCTCGTC
ACGCCGCTGG TCACGGTCCT GCTCGGCGTG CCGCCCATCG CGTGGATCGT CCTTGCGATG
ATCTGGTTCG GCGGCTCCGA CGCCACCGTG CGCACGGTGA TCCTCATCTC GGCCCTGCCG
GTGGTCTTCA TGGGGGCGGC GCGCGGCATC ACCACCCGGG ACCGGCGGCT CGACCGGCTG
GCCGAGGCCT TCGGGGCCGG CCCGCTGCGG CGCTTCCTGA CCATGGGGCT GCGGCAAACG
ACAACCACGC TCTTTCCCGC CCTCGCCCTG GCCCTGGGCA CCGCCTTCAA GGTGGCCGTG
ATGGCAGAGC TTCTGGCCAA CGCGGGCGGC ATCGGCGGGG CGCTCGCGGA CGCGCGCATC
AACCTCGACA TCGAACTGGC GCTCGCCTGG GTGCTGATCG CGGTCACGTT GCTGATCGCG
GTGGAGTACA CGCTCGTGCA GCCCGTGAAG GCCGAGATAG ACCGCTGGCG CCATGCGGCC
CGCCCCTGGG GGGTGAAGCG ATGA
|
|---|
| Protein sequence | MPPCPSARKI GTMMIQPFLI SLAARLGRIG AFLWSGWAGL AALALLFAAW QAGHEAYGPF
ILSAPLDTMG TVGALAVDPA AWEIAALTLQ RALSGFFLVA AAGTALGVAA GYFPAILRLV
TPLVTVLLGV PPIAWIVLAM IWFGGSDATV RTVILISALP VVFMGAARGI TTRDRRLDRL
AEAFGAGPLR RFLTMGLRQT TTTLFPALAL ALGTAFKVAV MAELLANAGG IGGALADARI
NLDIELALAW VLIAVTLLIA VEYTLVQPVK AEIDRWRHAA RPWGVKR
|
|---|
| |