| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1444 |
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| Symbol | |
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| ID | 5712621 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | + |
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| Start bp | 1500927 |
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| End bp | 1503581 |
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| Gene Length | 2655 bp |
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| Protein Length | 884 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 641267357 |
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| Product | TRAP transporter |
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| Protein accession | YP_001532787 |
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| Protein GI | 159043993 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4666] TRAP-type uncharacterized transport system, fused permease components |
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| TIGRFAM ID | [TIGR02123] TRAP transporter, 4TM/12TM fusion protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 0.636964 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCGATC CCAACCAGCA GCCCGGCGGC AAGGGTGGCG AAGGCCGCCA GTTCACCGAC
GAGGAACTCC AGGATCTGGT CGCCTCCACC GATAGCGGGG CGCGCAACCC GTCCAGCCGT
AGTGTGGCCT TGCTGATTGC CGGTCTCGCC CTGGCGTGGT CGCTCTTCCA GCTCTGGATC
GCCCAGCCCC AGCTTTGGTT CGCCGAATAT GTGTCGGTTC TCAACTCGTC CCAGACACGT
CCCCTGCACC TGACCTTCGC CATCGTGTTG GCGTTTCTGG CCTATCCCGC CTTCAAGAAT
TCGCCGCGCG ACCGCATTCC GCTCTTCGAC TGGATGCTGG TGGCCGTGGG CGGGTTTTGT
TCCTTCTACA TCTTCTGGTT CGCCGACACG CTCGCATTGA CCGCGCGCTC CGGCCTGCCG
ACGCAGACCC AGATCATCAT TGGTGCGATT GGACTGCTGT GCCTGCTGGA GGCGTCGCGC
CGGGCGCTGG GGCCTGCCCT GACCATCGTC GGATCGCTCT TTCTGCTTTA TGCTTATATG
GGGCAGGGCT GGCTGATCCC GAACCTGATC GAGCATGAGG GCCTGTCCTT CACCGCCCTG
ATCAACGCGC AATGGCTCGA CACGGCGGGG GTGTTCGGTA TCCCGCTGGG GGTGTCGACC
GCCTTCGTGT TCCTCTTCGT GCTGTTCGGC TCGCTCTTGG ACAAGGCCGG CGCGGGCAAC
TACTTCATTA AGCTCGCCTT CGCGGGGCTC GGCCATCTGC GCGGTGGGCC GGCCAAGGCG
GCGGTGGTCG GCTCGGCCAT GACGGGCCTG ATCTCGGGGT CGTCGATCGC CAACGTGGTG
ACCACCGGCA CCTTCACCAT CCCGCTGATG AAGCGCGTGG GCTTTACCGC CGAACAGGCC
GGCTCGGTCG AGGTGGCGTC CTCGGTCAAC GGCCAGATCA TGCCCCCGGT GATGGGCGCT
GCGGCCTTCC TGATGGTGGA GTTCATCGGC ATTTCCTATG TCGAGGTGAT CAAGCACGCC
TTCATCCCGG CGGTGATTTC CTACATCGCG CTGATCTACA TCGTGCATCT CGAAGCCCTG
AAAAAGGACA TGCCCGCGCT CGGCGAGGCC AAGAGCTTCG TCGGCATGAT CGTCAAGTTC
TTCCTCGGCT TCGCCATTGC GGGCGCCGGG TTCACTGTTC TCATCTACGC CGTGGGCGCG
CTGAAAGCCG CGGCCCCCGC GCTGACCGGG CCGGTGATGA TGGTCGCCCT TCTGGCGGTT
TACGTCTGGC TGGTGGCCAT CGCGTCGCGC CGCCCGGACC TGGAGGTCGA CGATCCCAAC
GCCAAGGAAA TCGTGCTGCC GCAGGTCAAG GACGTCTATG CCACGGGCCT GCACTACATC
CTGCCCATCG TGGTGCTGGT GTGGTTCCTG ATGGTCGAAC GGCAAAGCCC GGCCAAATCG
GCCTTCTATG CAACGTCGCT GATGATCTTC ATCATCCTGA CCCAGCGCCC GCTCAAGGCG
TTCTTCCGCG GCCTTGCCGC GGACGCGGTG GAAGAGTTCA AGGGCGGCTT CAACGACCTG
GTCGAGGGGC TGATCGCGGG GGCGCGCAAC ATGATCGGCA TCGGTGTGGC CACGGCCGCC
GCCGGCATCA TCGTGGCCAC GGTCACCAAG ACGCCCATCG GCACCGAATT GGCCGGGCTG
GTCGAACAGT TGTCCTTCGG CATCCTGTTC CTGATGCTCG TGCTGGTGGG GCTGTTCTCG
CTCATCCTCG GGATGGGGTT GCCGACGACC GCCAACTACA TCGTTGTCTC GTCGCTCATG
GCGTCGGTGG TGGTCTCGCT CGGCGCGCAG GAGGGGCTGA TCGTGCCGCT GATCGCGGCG
CATCTATTTG TGTTCTATTT CGGGATCATG GCGGATGTGA CGCCGCCGGT GGGCCTGGCG
AGCTTTGCTG CCGCCGCCGT GTCCGGGGGC GACCCGATCA AGACCGGGTT CACTGCTTTC
TTCTATTCCC TGCGCACGGT GGCGCTGCCC TTCCTGTTCA TCTTCAACCC GACACTGATC
CTCTATGGCG TGGATCTCGG GACATGGCCG GGCATATTCC AGGCCATCGG GGTGTTCATC
GTGGCGACCT TTGCCATGCT GCTCTTTGCC GCCGCCACCC AGGGGTATTT CTTCGCCAAG
TCACGCCTGC ATGAAAGCTT TGCGCTTCTT CTGGTGGCCT TCACGCTCTT TGTGCCGAAT
GTCTGGCTCA ACATGGTGCA GCCGCCCTTC CGCGAAGCCC CGGCCACGGA ATTCGAGCAG
GTGGTCGAAG CGGCCGAGAC CGGCCAGGCT TTGCGCCTGC TGATCCGCGG CCCGGACTTC
AACACCGGCG AGGCGGCGGA AACCACGATC CTGATGGAGA TCGGCGACGG CGATCTTGCG
CAGCGGATCG ACGCCTCGGG CCTGCTGCTG CTGCCCGAGG GCGACCAGGT GCGCCTCGAC
GAGCCCATGT TCGGCACCAA GGTCGCCGAG ATCCTGGCGG ATTTCGACTT CTACGCGGAT
GAGCCTGTGC AGATCGCCTC GATCCAGGTG CCGCAGACCC AACTGCCCGA GCAGGTCTTC
TACATCCCGG CGCTGCTCTT GCTGGGCGGG GTGATCGCGT TGCAGCGGCG CCGCCAGACC
AAGCCCGCTT TCTGA
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| Protein sequence | MTDPNQQPGG KGGEGRQFTD EELQDLVAST DSGARNPSSR SVALLIAGLA LAWSLFQLWI
AQPQLWFAEY VSVLNSSQTR PLHLTFAIVL AFLAYPAFKN SPRDRIPLFD WMLVAVGGFC
SFYIFWFADT LALTARSGLP TQTQIIIGAI GLLCLLEASR RALGPALTIV GSLFLLYAYM
GQGWLIPNLI EHEGLSFTAL INAQWLDTAG VFGIPLGVST AFVFLFVLFG SLLDKAGAGN
YFIKLAFAGL GHLRGGPAKA AVVGSAMTGL ISGSSIANVV TTGTFTIPLM KRVGFTAEQA
GSVEVASSVN GQIMPPVMGA AAFLMVEFIG ISYVEVIKHA FIPAVISYIA LIYIVHLEAL
KKDMPALGEA KSFVGMIVKF FLGFAIAGAG FTVLIYAVGA LKAAAPALTG PVMMVALLAV
YVWLVAIASR RPDLEVDDPN AKEIVLPQVK DVYATGLHYI LPIVVLVWFL MVERQSPAKS
AFYATSLMIF IILTQRPLKA FFRGLAADAV EEFKGGFNDL VEGLIAGARN MIGIGVATAA
AGIIVATVTK TPIGTELAGL VEQLSFGILF LMLVLVGLFS LILGMGLPTT ANYIVVSSLM
ASVVVSLGAQ EGLIVPLIAA HLFVFYFGIM ADVTPPVGLA SFAAAAVSGG DPIKTGFTAF
FYSLRTVALP FLFIFNPTLI LYGVDLGTWP GIFQAIGVFI VATFAMLLFA AATQGYFFAK
SRLHESFALL LVAFTLFVPN VWLNMVQPPF REAPATEFEQ VVEAAETGQA LRLLIRGPDF
NTGEAAETTI LMEIGDGDLA QRIDASGLLL LPEGDQVRLD EPMFGTKVAE ILADFDFYAD
EPVQIASIQV PQTQLPEQVF YIPALLLLGG VIALQRRRQT KPAF
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