| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1428 |
|---|
| Symbol | |
|---|
| ID | 5712605 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | - |
|---|
| Start bp | 1483002 |
|---|
| End bp | 1484636 |
|---|
| Gene Length | 1635 bp |
|---|
| Protein Length | 544 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 641267341 |
|---|
| Product | glucose-methanol-choline oxidoreductase |
|---|
| Protein accession | YP_001532771 |
|---|
| Protein GI | 159043977 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG2303] Choline dehydrogenase and related flavoproteins |
|---|
| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 35 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCGAC GCGATTTCCT GCGCCGTGCA ATGGCGCTGG GGGCGACCGC CGGCATGGCC
GGTGCGCTCG CGACAGCCTG GTCCGGCACG GCAATCGCGC AGTCTTCGAC CACCGCGCCG
CAGCCCGACG GGGAATACGA CTTCATCGTG ATCGGCACGG GCTCCGCCGG GGCCGCTTGC
GTGTATCAAC TGGCTCAGAC AGGCGCGCGG ATCCTCGTGC TCGAAGCCGG GCGCAACGAC
GACCTCGAAG AGGTCCATGA CAGCCGCCTG TGGGCTGCGT CCCTTGGCAC CGACGCCACG
AAATGGTTCG AAACCCTGCC CTCCAGCCAT ACGGATGGAC GCAATCACAT GTGGCCGCGC
GGCAATGTGT TGGGCGGGAC ATCTGCCTTG AACGCGATGG TCTATGCGCG CGGGCACAGG
ACCGATTTCG ACGTCTGGGA GACGATGGGT GCCACCGGTT GGAGCTATGA AGACGTACTA
CCGCATTTCA TGGCGATGGA AAGCTATGAG CCCGGGGGCG AGAACCGCGG CACCAGCGGC
CCGATCTTTG TCAGCCAACC CCAGGACCCA CACCGCCACG AAGGGGCCGT CGCGTTCATG
GATGCCGCGG CGGGGCTGGG ATACAAAGAA ACGCCGTCCT TCAACTCCGA TCGGATGTCC
GGTCAGGCCT GGATCGATTT CAACATCAAG GACCAGCGGC GTCAGTCGTC TGCAGTCGCA
TTCCTGCGCC CGGCGATCGA GAACGGCAAC ATCACGCTGC TGACCGATGC CCCGGTCCAG
AAGCTGACCC TGGAGGGCAC GAAATGCACC GGGGTCACCT ACCTGCACAA CGGCGCGCCC
GTCAGCGTCC GGGCGGCGAA CGAGGTGATC CTCTCGGCCG GGGCCATCGA CAGCCCCAGG
CTGCTGATGC TGTCGGGGAT CGGCATCGCG TCCGACCTCA GGCAGGTCGG GATCGACGCC
GTCGTCGACT TGCCGGTTGG TGTCGGGCTC CAGGACCACA TTCTCGGCGC AGGTGTGAAC
TACGAAGCCA AGGGCCCCGT GCCGGTCAGC CATTACAACC ACTCCGAAGT CTACATGTGG
GAACGATCGG ATCCGGGCCT GCGGTCACCC GACATGATCG CGCTCTATGT TTCGGTGCCC
TTCGCCTCTA CCGGTCACAA GCTGGATTAC GAGCACGGCT ACTGCATTCT CTCGGGCGTC
GCGACGCCGC AATCGCGCGG CTACGTCAAG CTGGCGTCTG ACGACATCGC GGATGCCCCG
ATCATCGAGA CCAATTACCT GGCCGAGGAA CAGGATTGGA AGTCCTACCG TGCCGCGACC
GAGCTGTGCC GCGAGTTGGG CGCCTCGGAC GCTTATGCCG AGTTCCGCAA GCGCGAGAGC
CTGCCGCAGA AGGACGGGGA GCTGACGGAT GCCGAATGGC GCGACTTCCT CTCCGCGTCG
GTCAACACCT ATTTCCACCC CACATCCACA TGCCAGATCG GCAAGGTGGT GGAGCCGGAT
CTGCGCGTGA AAGGCATTGA GGGCCTGCGA GTTGCGGATG CGTCCGTCAT GCCGCAGATC
ACCACCTCCA ACACCAACGC GCCGACCATG ATGATCGGTT GGCGCGCGGG TGACATGATC
TCCAAAGCAA CCTAG
|
|---|
| Protein sequence | MSRRDFLRRA MALGATAGMA GALATAWSGT AIAQSSTTAP QPDGEYDFIV IGTGSAGAAC
VYQLAQTGAR ILVLEAGRND DLEEVHDSRL WAASLGTDAT KWFETLPSSH TDGRNHMWPR
GNVLGGTSAL NAMVYARGHR TDFDVWETMG ATGWSYEDVL PHFMAMESYE PGGENRGTSG
PIFVSQPQDP HRHEGAVAFM DAAAGLGYKE TPSFNSDRMS GQAWIDFNIK DQRRQSSAVA
FLRPAIENGN ITLLTDAPVQ KLTLEGTKCT GVTYLHNGAP VSVRAANEVI LSAGAIDSPR
LLMLSGIGIA SDLRQVGIDA VVDLPVGVGL QDHILGAGVN YEAKGPVPVS HYNHSEVYMW
ERSDPGLRSP DMIALYVSVP FASTGHKLDY EHGYCILSGV ATPQSRGYVK LASDDIADAP
IIETNYLAEE QDWKSYRAAT ELCRELGASD AYAEFRKRES LPQKDGELTD AEWRDFLSAS
VNTYFHPTST CQIGKVVEPD LRVKGIEGLR VADASVMPQI TTSNTNAPTM MIGWRAGDMI
SKAT
|
|---|
| |