| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1426 |
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| Symbol | |
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| ID | 5712603 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | + |
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| Start bp | 1479836 |
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| End bp | 1481350 |
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| Gene Length | 1515 bp |
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| Protein Length | 504 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 641267339 |
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| Product | hydro-lyase |
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| Protein accession | YP_001532769 |
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| Protein GI | 159043975 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1838] Tartrate dehydratase beta subunit/Fumarate hydratase class I, C-terminal domain
[COG1951] Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain |
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| TIGRFAM ID | [TIGR00722] hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha region
[TIGR00723] hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta region |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 0.74194 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGCAAG CCACAGTTCT GAAACCCGAT GACATCGTCG AAACCGTACG CGCGGCGCTG
CAATACATCG CCGTTTATCA TGCCCCCGAC TACCTGGCGC ATCTGGCCAG CGCCTATGCC
CGTGAGCAGA GCCCCGCCGC GAAGGCGGCG ATGGGGCAGA TCCTGGAAAG TTCGCGCCTG
GCTGCACTGG GGCGACGGCC GATTTGCCAG GACACGGGCA TGGTGACGGT CTTTGCGCGG
TTGGGACAAT CGGCGATGAT CGCCGGGGAC CGGACCTTGT ACGAGTTGGT CAACGAGGGC
GTGCGCCTGG CCTACCTGGA TGCGGGCAAT CCCTTGCGGG CCTCGATGGT GGCAGACCCG
CTTTTAGAGC GCAGAAACAC CGGCGACAAC ACCCCCGCCG TCACCCATGT GGAGCTCACG
CGGGGCAATA AGTTGGAGCT CTTGATTGCG GCCAAGGGCG GTGGGTCCGA GAACAAGGCG
CGCTACACGA TGCTCAACCC GGCGGCCTCG GTTGAAGACT GGGTTGTCTC GACGATCGAA
GGGCTGGGGG CCGGGTGGTG TCCGCCCGGC CTGGTGGGCG TCGGCGTCGG GGGCAGCGCG
GAGCAGGCTA TGCTGATCGC CAAGCGCGCG GTCATGGAGG AAATCGACAT GTCCGACCTG
CTGGCCCGCG GCGCGTCCAC ACCGCTCGAG GAGATGCGCG TGCGGCTCTA CCACCGCATA
AACGCGCTCG GGATCGGGGC ACAGGGTCTT GGCGGCTTGA CCACGGTGGT CGATGTGAAA
CTGGCCACCG CGCCCACGCA TGCCGCGTCC AAGCCTGTGG CGCTGGTGCC GCAATGCGCC
GCGAACCGAC ATGCGAAGGT CGTGATGGAT GGCAGCGGTC CGGCCTATCT CGATGCGCCC
GATCTGGCTG CCTGGCCGCG GATCGAGGGG TCGGAAATGG CGGGTCTGCG CCGGGTGAAC
GTGGACAGGC TCACGCGTGA GGAGATGGCC GGATGGGCCC CGGGCGAGAC GCTGCTGCTG
TCGGGCCGGA TCCTGACCGG GCGCGACGCG GCCCACAAGC GCATGGCCGA CATGCTGGCG
CGTGGAGAAG AGTTGCCGGT GTCGTTGCGG GGACGGGTGA TCTATTATGT CGGGCCGGTG
GACCCGGTGG ATGGGGAGGC GGTCGGACCC GCCGGTCCCA CTACCGCCAC ACGCATGGAT
CCGTTCACCA GCGACATGCT GGGCCAGGGT CTGTTTGCCA TGATCGGCAA GGCCGAGCGG
GGCGCGGAGA CCGTCCGGGA CATAGCGCGC CACAAGGCCG CCTACCTGAT CGCGGTAGGT
GGCGCCGCGG TCCTGGTGGC AAAGGCGATC CGGTCCTCGA AGGTGCTGGC GTTCGAGGAT
TTGGGCATGG AGGCGATCCG GGAGTTCACG GTCGAGGACA TGCCAGTCAT GGTGGCGGTC
ACGACGCAAG GGGCGGCGAT CCATCAGACC GGACCTGCGG CTTGGAGAGG TGCCCAGCAG
AGCGCTCCGG CGTGA
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| Protein sequence | MTQATVLKPD DIVETVRAAL QYIAVYHAPD YLAHLASAYA REQSPAAKAA MGQILESSRL
AALGRRPICQ DTGMVTVFAR LGQSAMIAGD RTLYELVNEG VRLAYLDAGN PLRASMVADP
LLERRNTGDN TPAVTHVELT RGNKLELLIA AKGGGSENKA RYTMLNPAAS VEDWVVSTIE
GLGAGWCPPG LVGVGVGGSA EQAMLIAKRA VMEEIDMSDL LARGASTPLE EMRVRLYHRI
NALGIGAQGL GGLTTVVDVK LATAPTHAAS KPVALVPQCA ANRHAKVVMD GSGPAYLDAP
DLAAWPRIEG SEMAGLRRVN VDRLTREEMA GWAPGETLLL SGRILTGRDA AHKRMADMLA
RGEELPVSLR GRVIYYVGPV DPVDGEAVGP AGPTTATRMD PFTSDMLGQG LFAMIGKAER
GAETVRDIAR HKAAYLIAVG GAAVLVAKAI RSSKVLAFED LGMEAIREFT VEDMPVMVAV
TTQGAAIHQT GPAAWRGAQQ SAPA
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