| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1388 |
|---|
| Symbol | clpP |
|---|
| ID | 5712564 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | - |
|---|
| Start bp | 1442020 |
|---|
| End bp | 1442646 |
|---|
| Gene Length | 627 bp |
|---|
| Protein Length | 208 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 641267300 |
|---|
| Product | ATP-dependent Clp protease proteolytic subunit |
|---|
| Protein accession | YP_001532731 |
|---|
| Protein GI | 159043937 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0740] Protease subunit of ATP-dependent Clp proteases |
|---|
| TIGRFAM ID | [TIGR00493] ATP-dependent Clp protease, proteolytic subunit ClpP |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 0.302256 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 41 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCATGATC CCGTAGATAC CTACATGAAC CTCGTTCCCA TGGTGGTCGA ACAGACCAGC
CGCGGCGAAC GGGCCTATGA CATCTTCTCA CGACTGCTCA AGGAGCGGAT CGTGTTCGTG
AACGGTCCCG TCCATGACGG GATGAGCCAG CTGGTGGTGG CACAGCTGCT GCACCTGGAG
GCGGAGAACC CGTCCAAGGA AATCTCGATG TATATCAACA GCCCCGGTGG CGTGGTGACC
TCGGGCCTGT CGATCTATGA CACCATGCAA TACATCAAGC CGAAGGTCTC CACCCTGGTG
GTGGGACAGG CGGCGTCCAT GGGGTCGCTT CTGCTGACCG CGGGGGAGAA AGGCATGCGC
TTTTCGCTGC CCAACAGCCG GATCATGGTT CACCAGCCCT CGGGCGGCTA CCAGGGTCAG
GCGACGGACA TCATGATTCA CGCCCAGGAG ACCCAGAAGC TCAAGGATCG GCTGAACCAG
ATCTACGTCA AGCACACGGG CCAGCCCCTG AAAAAGGTGG TCGATGCCCT GGAGCGCGAC
AATTTCATGG ATGCGGAGCA GGCCAAGGAA TGGGGCCTGA TCGACGAGAT CGTCGAGAGC
CGCGCCAACG AGGACACCAG CAAGTAA
|
|---|
| Protein sequence | MHDPVDTYMN LVPMVVEQTS RGERAYDIFS RLLKERIVFV NGPVHDGMSQ LVVAQLLHLE
AENPSKEISM YINSPGGVVT SGLSIYDTMQ YIKPKVSTLV VGQAASMGSL LLTAGEKGMR
FSLPNSRIMV HQPSGGYQGQ ATDIMIHAQE TQKLKDRLNQ IYVKHTGQPL KKVVDALERD
NFMDAEQAKE WGLIDEIVES RANEDTSK
|
|---|
| |