| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1363 |
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| Symbol | pyrD1 |
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| ID | 5712539 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | + |
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| Start bp | 1416350 |
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| End bp | 1417648 |
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| Gene Length | 1299 bp |
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| Protein Length | 432 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 641267275 |
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| Product | dihydropyrimidine dehydrogenase |
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| Protein accession | YP_001532706 |
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| Protein GI | 159043912 |
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| COG category | [C] Energy production and conversion
[F] Nucleotide transport and metabolism |
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| COG ID | [COG0167] Dihydroorotate dehydrogenase
[COG1149] MinD superfamily P-loop ATPase containing an inserted ferredoxin domain |
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| TIGRFAM ID | [TIGR01037] dihydroorotate dehydrogenase (subfamily 1) family protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 0.709069 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCAGACC TGCGTTCGGA CTTCGTCGGT GTGAAATCCC CCAACCCTTT CTGGCTGGCC
TCCGCGCCGC CGACGGACAA GGAGTACAAC GTGCGCCGCG CCTTCGAGGC CGGGTGGGGC
GGGGTGGTAT GGAAAACCCT CGGCTTCGAC CCCCACGTGG TCAACGTGAA CGGCCCGCGT
TATGGCGCGG TCTGGGGCGC GGACCGGCGG CTTCTGGGCC TGAACAATAT CGAGCTGATC
ACCGACCGGC CGCTGGAGGT GAACCTGCGC GAGATAAAGC AGGTCAAGCG CGACTATCCG
GACCGGGCCA TGGTCGTGTC GCTCATGGTG CCTTGCGAGG AGGATCCCTG GAAGAAGATC
CTGCCCCTGG TCGAAGAGAC CGGCGCCGAC GCGGTGGAGC TGAACTTCGG CTGCCCCCAC
GGGATGAGCG AGCGGGGCAT GGGATCGGCC GTGGGCCAGG TGCCCGAATA CATCGAAATG
GTCGCGCGCT GGTGCAAGCA GCACACGCGC ATGCCGGTCA TCGTGAAGCT GACCCCGAAC
ATCACCGATA TCCGCTACCC GGCGCGGGCG GCCCATGCGG GCGGCGCGGA CGCGGTCAGC
CTGATCAACA CGATCAGCTC GATCACCTCG GTCAACCTCG ACAGTTTCAG CCCCGAGCCG
AGCATCGATG GCAAGGGTTC CCACGGGGGC TATTGCGGGC CCGCGGTCAA GCCGATCGCG
CTGAACATGG TGGCCGAGAT CGCGCGGGAT GCGGAAACCG CCGGGATGCC GATCTCGGGG
ATCGGCGGAG TGACGACCTG GCGCGACGCG GCGGAATTCC TGGCCCTCGG GGCAGGCAAC
GTGCAGGTCT GCACCGCTGC GATGACCTAT GGCTTCAAGG TGGTACAGGA GATGATTTCG
GGCCTGTCCC AGTATCTCGA CGAGAAGGAC ATGACCCTCG ACGACCTGAT CGGACGGGCG
ACCCCGAACG TCACCGACTG GCAGTATCTG AACCTGAACT ACGTCACCAA GGCCCGCATC
GACCAGGACA GCTGCATCAA GTGCGGGCGC TGCTATGCCG CCTGCGAGGA TACCTCGCAC
CAGGCGATTT CCATGAGTGC GGACCGTGTC TTCGAGGTGA TCGATGCGGA ATGCGTGGCC
TGCAACCTGT GTGTGAATGT CTGCCCGGTG GAGGACTGCA TCACCATGGT CGAAATGCAG
CCGGGCGAGG TCGATCCGCG CACCGGCAAG GTGGTCGAGA AGGACTACGC GAACTGGACC
ACGCATCCGA ACAATCCGGC GTCGCAAGCC GCCGAGTGA
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| Protein sequence | MADLRSDFVG VKSPNPFWLA SAPPTDKEYN VRRAFEAGWG GVVWKTLGFD PHVVNVNGPR
YGAVWGADRR LLGLNNIELI TDRPLEVNLR EIKQVKRDYP DRAMVVSLMV PCEEDPWKKI
LPLVEETGAD AVELNFGCPH GMSERGMGSA VGQVPEYIEM VARWCKQHTR MPVIVKLTPN
ITDIRYPARA AHAGGADAVS LINTISSITS VNLDSFSPEP SIDGKGSHGG YCGPAVKPIA
LNMVAEIARD AETAGMPISG IGGVTTWRDA AEFLALGAGN VQVCTAAMTY GFKVVQEMIS
GLSQYLDEKD MTLDDLIGRA TPNVTDWQYL NLNYVTKARI DQDSCIKCGR CYAACEDTSH
QAISMSADRV FEVIDAECVA CNLCVNVCPV EDCITMVEMQ PGEVDPRTGK VVEKDYANWT
THPNNPASQA AE
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