| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1357 |
|---|
| Symbol | |
|---|
| ID | 5711908 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | + |
|---|
| Start bp | 1409932 |
|---|
| End bp | 1410981 |
|---|
| Gene Length | 1050 bp |
|---|
| Protein Length | 349 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 641267269 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_001532700 |
|---|
| Protein GI | 159043906 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3839] ABC-type sugar transport systems, ATPase components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.237797 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 34 |
|---|
| Fosmid unclonability p-value | 0.591825 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGCGCGA TAACCCTGAG CAAGGTCGAG AAATGGTTCG GCGACGTGCA GGTCATCAAG
GGCGTGGACC TGGAGATCCG CGACGGGGAG TTCGTGGTCT TCGTCGGCCC GTCCGGCTGC
GGAAAATCCA CGCTGTTGCG CATGATCGGC GGGCTGGAGG ACACCTCCCG CGGCGCGATG
TTGATCGACG GGGTGGATGT GACCGACCAT CCGCCCGCCA AGCGGGGGCT GACCATGGTG
TTCCAGTCCT ATGCGCTTTA TCCGCATATG TCGGTGCGCG AGAACATGGG CTTTTCCCTG
AAAACCGCAG GCGCCCCCGC CGCCGAGATC GCCGAGAAGG TGGAAGCGGC GGCCGCCGTG
CTGAAGCTGG AGCCGTATCT CGACCGCCGG CCCAAGGACC TCAGCGGCGG GCAGCGGCAG
CGGGTCGCCA TCGGCCGATC CATCGTGCGT GCGCCCACGG CGTTCCTGTT CGACGAGCCG
CTCTCGAACC TCGATGCGGC GCTCAGGGTC GAGATGCGCT ACGAGATTGC CAAGCTGCAT
CAGAGCCTCG ACACCACCAT GATCTACGTC ACCCATGACC AGGTGGAGGC GATGACGCTC
GCCGACCGGA TCGTGGTGCT GGAGTTCGGC AAGATCGCGC AGGTGGGCAC CCCGCGGGAG
CTTTACGAGA CCCCCGCGAA CCTGTTCGTG GCGCAGTTCA TCGGCAGCCC CAAGATGAAC
GTCATGCCCT GTACCACCGA TGCGGGACGC TACAGGTTGA GTGCGGGGCG CGGCGGGGTG
TTCTCCGGGG ACCGTCCGGC GGTACAACTG GGCATCCGGC CCGAGCATAT CACGCCGGGC
GCGCCGGGGA CCGGGGCCTG CGACGGGCGG GTGGATGTGG TCGAATACCT CGGGGCTGAC
ACCCTGCTGG TGCTGGATTG CGGGCCCGAG GGGCGGGTGA CGGTCCGGGT GATCGGGGAC
ACCGACCTGA CACCGGGCGA CGCGGTGGGC CTGAGTTTCA ATCCCGACCG TCTGTCGTTC
TTCGACACCG ACGGCCTGGC GATCCGCTGA
|
|---|
| Protein sequence | MGAITLSKVE KWFGDVQVIK GVDLEIRDGE FVVFVGPSGC GKSTLLRMIG GLEDTSRGAM
LIDGVDVTDH PPAKRGLTMV FQSYALYPHM SVRENMGFSL KTAGAPAAEI AEKVEAAAAV
LKLEPYLDRR PKDLSGGQRQ RVAIGRSIVR APTAFLFDEP LSNLDAALRV EMRYEIAKLH
QSLDTTMIYV THDQVEAMTL ADRIVVLEFG KIAQVGTPRE LYETPANLFV AQFIGSPKMN
VMPCTTDAGR YRLSAGRGGV FSGDRPAVQL GIRPEHITPG APGTGACDGR VDVVEYLGAD
TLLVLDCGPE GRVTVRVIGD TDLTPGDAVG LSFNPDRLSF FDTDGLAIR
|
|---|
| |