| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1353 |
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| Symbol | |
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| ID | 5711904 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | + |
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| Start bp | 1404655 |
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| End bp | 1405959 |
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| Gene Length | 1305 bp |
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| Protein Length | 434 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 641267265 |
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| Product | extracellular solute-binding protein family 1 |
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| Protein accession | YP_001532696 |
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| Protein GI | 159043902 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1653] ABC-type sugar transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 30 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 0.621342 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCCTGA CCGCAGGGGC CGTCAGCGCC GACACGATCC GCTTCTGGAC CACCGAGGAG
CAGCCCGAGC GCCTGGCCAA GCAGCAGGAA ATGGCCGCGC AATTCGAGGC GGAGACCGGC
ACCGCCGTGG AGGTGATCCC GGTCACCGAG AGCGACCTGG GCACCCGGGC CACGGCGGCC
TTCGCGGCGG GCGATCTGCC GGACGTGATC TATCACACCC TGCAATACGC GCTGCCCTGG
GCGGAGGCTG GCATTCTGGA CACCGATGCC GCCACCGAGG TGGTCGAGGA TCTAGGCGAG
GATACCTTTG CGCCCGGGGC CTTGCAGATG GCCTCCACCG GCGATGGCGT GGCCTCGGTG
CCGGTGGATG GCTGGACCCA GATGATCGTC TATCGCAAGG ACAAGTTCGA GGAGATGGGG
CTGGAGCCGC CGACCTCCTT TGCCAATGTG ACTGCCGCGC TGGAGGCGCT GCACAATCCG
CCGGAGATGT ACGGCTTCGT GGCCGCCACC AAGGTGGACG AGAACTTCAT GTCCCAGGTT
CTGGAGCATG TGTTCCTGGC CAACGGCGTC AGCCCGGTGG ACGACGATGG CTTCGCGCCG
CTCGACGAGG CCGCCACCAC CGAAGTGCTG GAGTTCTACA GGGCGATCGC CGAGGCCTCG
CCCCCGGGCG AGCTTTACTG GAAGCAGTCG CGCGAGCTCT ATTTCGCGGG ACAGGCCGCG
ATGATCATCT GGTCGCCCTT CATTCTCGAC GAGTTGGCCG GTCTGCGCGA CAGCGCGCCG
CCCACCATCA ACGACGACCC GACCAGCGCG GAATTGGCCA GCCTGACCGG CATCGTGACC
AACTTCTCCG GCCCGTCGAA CCCCGAAGGT GCTGCCTGGG GCGATATCCG GTATTTCGGC
ATCACCACGG ACGCGGACAC AGACGCGGCG ATGGAGTTCG TGAAGTTCTC GATGGACGAG
GGCTATACCC AAACCCTCAG CATCGCGCCG GAGGGCAAGT TCCCGGTCCG CAAGGGCACG
GCCGAGGATC CGCAGAAGTT CACCGAGGCC TGGTCGCAGC TGCCCGTGGG CGTGGATCGC
AAGGCGCCGT TGGGCGATCT TTATGACGCG GCGATGATCG ACGAGATCGT CGGCGGGCTC
GATGTGGCGC AGCGCTGGGG CGTGGCGGAG GGGCAGTTGT CGCTGGCCTC CAAGATGATC
AACAGCCAGG CGATCAACCG TATCGTGCGT CAGTATATCG ATGGCGAGGT CGATGCCGCT
GCCGCCGTGG CCGCGATGAA CGACGCGCTG TCGCAGATCG ACTGA
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| Protein sequence | MALTAGAVSA DTIRFWTTEE QPERLAKQQE MAAQFEAETG TAVEVIPVTE SDLGTRATAA
FAAGDLPDVI YHTLQYALPW AEAGILDTDA ATEVVEDLGE DTFAPGALQM ASTGDGVASV
PVDGWTQMIV YRKDKFEEMG LEPPTSFANV TAALEALHNP PEMYGFVAAT KVDENFMSQV
LEHVFLANGV SPVDDDGFAP LDEAATTEVL EFYRAIAEAS PPGELYWKQS RELYFAGQAA
MIIWSPFILD ELAGLRDSAP PTINDDPTSA ELASLTGIVT NFSGPSNPEG AAWGDIRYFG
ITTDADTDAA MEFVKFSMDE GYTQTLSIAP EGKFPVRKGT AEDPQKFTEA WSQLPVGVDR
KAPLGDLYDA AMIDEIVGGL DVAQRWGVAE GQLSLASKMI NSQAINRIVR QYIDGEVDAA
AAVAAMNDAL SQID
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