Gene Dshi_1346 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDshi_1346 
Symbol 
ID5711912 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDinoroseobacter shibae DFL 12 
KingdomBacteria 
Replicon accessionNC_009952 
Strand
Start bp1398467 
End bp1399318 
Gene Length852 bp 
Protein Length283 aa 
Translation table11 
GC content68% 
IMG OID641267258 
Productprotein of unknown function DUF815 
Protein accessionYP_001532689 
Protein GI159043895 
COG category[R] General function prediction only 
COG ID[COG2607] Predicted ATPase (AAA+ superfamily) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones31 
Fosmid unclonability p-value0.225611 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGACCGAAG ACGTGATGGT ACGGATCGCC GAGGCGCTGG AGCGTCTCGC GCCGCCGCCC 
TTGGCCGCCC CGGATTTCAC CCGCGCCGAC GCCTTCCTGT GGCAAGAACG GCCCGAGGCG
GTGCTGCCGG TGCGCGACGT CAACCGGATC GACATCGCCC TGCTGGTGGG CATTACCCGG
GCGCGCGACA CCTTGCTGGA GAACACCCTG CAGTTCGCCC GCGGTCTGCC CGCGAACAAC
GCGCTCCTCT GGGGCGCGCG GGGGATGGGG AAATCGTCGC TGGTCAAGGC GGTCCATGCC
GAAGTGCTAC GCCAGGGGCA CGAGTTGAAG CTGGTGGAGG TGCCGCGCGA GGATCTCGCC
AGCATCGGGC GGCTGCTCGA CCATCTGCGC GCCGCGCCCG GCCATCGCTT CGTGCTCTAT
TGCGACGATC TGAGCTTTTC CCATGACGAC CAGCACTACA AATCGCTCAA GGCGGTGCTG
GATGGCGGCA TCGCCGGGCG GCCGGACAAC GTGGTGTTCT ACGCCACCTC GAACCGCCGC
CACCTGATGC CCCGCGACAT GATCGAGAAC GAGCGATCGT CCGCGATCAA CCCCTCCGAG
GCGGTGGAGG AAAAGGTGTC GCTCTCGGAC CGGTTCGGGC TCTGGCTGGG CTTTCATGCC
TGTGGGCAGG ACGAGTATCT CGCGATGATC GACGGCTACT GCGCGGCCTA CGGGCTGCAG
GTCGCGCCCG AGGTGCTGCG CGCCGAGGCG ATCGAGTGGC AGGCGACCCG TGGCGGGCGC
TCGGGCCGGG TCGCGTGGCA GTTCTTCACC GATCTCGCCG GGCGGCATGG CGTGACGCTC
AACGCGCCGT AA
 
Protein sequence
MTEDVMVRIA EALERLAPPP LAAPDFTRAD AFLWQERPEA VLPVRDVNRI DIALLVGITR 
ARDTLLENTL QFARGLPANN ALLWGARGMG KSSLVKAVHA EVLRQGHELK LVEVPREDLA
SIGRLLDHLR AAPGHRFVLY CDDLSFSHDD QHYKSLKAVL DGGIAGRPDN VVFYATSNRR
HLMPRDMIEN ERSSAINPSE AVEEKVSLSD RFGLWLGFHA CGQDEYLAMI DGYCAAYGLQ
VAPEVLRAEA IEWQATRGGR SGRVAWQFFT DLAGRHGVTL NAP