| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1338 |
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| Symbol | uspA1 |
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| ID | 5711896 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | - |
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| Start bp | 1391461 |
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| End bp | 1392303 |
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| Gene Length | 843 bp |
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| Protein Length | 280 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 641267250 |
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| Product | UspA domain protein |
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| Protein accession | YP_001532681 |
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| Protein GI | 159043887 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG0589] Universal stress protein UspA and related nucleotide-binding proteins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 0.0244136 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACATCTA TCTGCATTGC AACGGACCTG CATGGGGATA CGGATCGCGC CATGGCGAGG
GCCGCGCGGC TGGCGCGAAT CCACGGCGCG CGGCTCTGCG TGGTGTCGGT GGTGCCGGAT
GCGGCGCGGG ACGCGGAGAT GAGCGCGCGT CGCGCCACGC TGGAGGCGCT GGTCGCGAAC
CTGCCCGACA GCGCAGGTCT GGAGACGGAG ATCATCGTCG CCAGTGGCGA GCCGTCGGAG
CAGATCCACC ATGCGGCCCT TCATGCCAAG GCGGATCTGA TGGTGGTGGG GCCCCATCAC
CAGGCAGGGA TGCTCGATTC GTTGCGGCAG ACGACGCTGG AAAAACTGGT CAAGGCGGCG
CCGACGCCTG TCCTGCTGGT CACGGATCCG GTGGATCACG ACTATGCCAG CGTGATCGCG
CCGGTCGATT TCTCACCCGC CTGTGCGGCG GCGGTGCGGG CGGCGCGGAC CTTCGCCCCG
GCGGCTGCGA TCCACCTTCT TCATTCGGTG GGCGTGCCCT ACCAAACCAT CGTCGCGGCC
CCGGGGGCGG TGGGCGATGT CAGCCCCATG GCCGATCCGA CCCCGTTCAT CGAGGATGCC
AAGACCCGCG CCGAGGCCTG GCTTGCCGAA GAGCCGGGGC TTCTGGGTCT GACGCCACCG
GTCGCCGAGC CGCGGGCCCT GCCGCAATTG CTGGGCACGG TGCGGGCGGA AAAGGGCGGT
GACCTGATCT GCCTCGGGGC GCATACGAAG CAGGGGTTTC TGGACCGGTT GCTCGGCAGC
TTCACCGCCG AGTTGATCCG CAAACCGCCC TGTGACCTGC TGATCGCGCC GGGCGCGCGG
TGA
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| Protein sequence | MTSICIATDL HGDTDRAMAR AARLARIHGA RLCVVSVVPD AARDAEMSAR RATLEALVAN
LPDSAGLETE IIVASGEPSE QIHHAALHAK ADLMVVGPHH QAGMLDSLRQ TTLEKLVKAA
PTPVLLVTDP VDHDYASVIA PVDFSPACAA AVRAARTFAP AAAIHLLHSV GVPYQTIVAA
PGAVGDVSPM ADPTPFIEDA KTRAEAWLAE EPGLLGLTPP VAEPRALPQL LGTVRAEKGG
DLICLGAHTK QGFLDRLLGS FTAELIRKPP CDLLIAPGAR
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