| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1334 |
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| Symbol | |
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| ID | 5711892 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | - |
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| Start bp | 1386187 |
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| End bp | 1387725 |
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| Gene Length | 1539 bp |
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| Protein Length | 512 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 641267246 |
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| Product | tetratricopeptide TPR_2 repeat protein |
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| Protein accession | YP_001532677 |
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| Protein GI | 159043883 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4783] Putative Zn-dependent protease, contains TPR repeats |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.278248 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 0.0416734 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTCGGTT CCTGGCTTTC AAAGGTATTG TTTCCTATAA CGATCTGCAC GCTGATTGGT
GGGCTTTCAT TGCAGGATGC CTTTGCCCGG TCATTACAGA TTGACGATCT GACCAGGGAG
CGGGAACAGA GTAGCATCCT GCGCAGTCTG CAACTTGACG CCTTCAAGGA TCCGGAGCTT
CTCCAACTTT TCAAAGACGC CTCCAGCGCC TTGCGGGAGG AGCGGTACGA GGACGCAGAG
GCCGCAGCCC TCAGCCTGAC AGAAAAGGCA CCAGACGCGC CACAAGGCTG GCACATGTTG
GGAATGGCCC GCGTGAAAAA CGGGTCCACT TCCGGTGCGC TTCACGCCCT AGACGCCGCG
GCAGCGCGTT ACAAGAACAA CTCGGACCCT TTGGTCATCA AGGGAGATGT GCTGCGCGGG
CTGGGTCGGT TTGACGATGC CGAGGCCGCT TATCGTCGCG CCGTCGAGAT TAATCCGGAC
GATCTGCGCG GGGTCGAGGG GCTTGGTGCG ATGTTAGAGG CTGGGGGCAA AGCGGACGAA
GCGATCACCG TCTATCAATC TGCTCTTGCA ACGAACCCTT CGGATATCGC CTTCGCGTTG
AATACCGCGC GCCTCCAGGT GGCACTGGAC GATCTTTCCG CCGCACGGGA GACCCTAAAG
AGGTTCGAGG CCTCAAATCC CGAAAACTCC CAGGTCAAAA TTGCACTCGG GCGAGTTGAA
TTCCTTTCTG GAAACAATGA AGCCGCGACG GCCTATTTCG ATCAGGCGAT CCGCATCGCG
CCCGAGAATT CGACCCAGTA TCTGCTAAAG GCACGCGCCC AGCTGAATGC AACCGAGTTT
GCAGCGGCAG AAGAAACATT GCGCGGCGCG CGTGAGATCT TTCCGGATGA TCCGCAAGTG
CCCTTTGAAC TCGCCAGTCT GTACGGAGTC ACGCGCGACT ACGCCCGGGC TGCCGAAGTG
TTCGAGGCAG GCGCCGAAAG GTGGCCTGAT ATCATGGGAT TCCACTCTGG ACTCCTCAGG
GCCTCTTATC GCCTGAATGA TTTTGATGCG GCCCTGTCCG CTGCAAGAGT GCTTTCAAGC
CAGCCCGGCG CCTCTGCCGT CGACCACATC TGGCATGCAC TCGTCCTCGA GAGGCTCGAG
CGGGTCGATA GCGCGATCAC CTCGTATGAT ACTGCACTGG AGCTTGATCC AACAAACTGG
CTTGCCGCCA ACAATCTGGC AAACCTTTTG TTTGACCGTG CCCCAGACAG GGCATTGGAG
CTTGCACGGC TGGCTCATCG GACAGCGTCC GAAAACATCT CGGTAAACAG GACACTCGCC
TGGGCAGAAT TTTCCGCCGG CAACACCGAG GCCGCCCTCG CGCTCTACGA CTCTCTGACG
CCAGAAGCTT CCGATGATCC GATCCAACTC TTCCGGCACG GGCAGGTTCT GATTGAAGCC
GAAGAGGCCG AAGCAGGCCG CATCCTCATC CAAAAAGCTC TTGCACTTGA TGCTGAATTC
AGGGGAGCAG AAGATGCTCG GAAGCTGCTC GCGGAATGA
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| Protein sequence | MFGSWLSKVL FPITICTLIG GLSLQDAFAR SLQIDDLTRE REQSSILRSL QLDAFKDPEL
LQLFKDASSA LREERYEDAE AAALSLTEKA PDAPQGWHML GMARVKNGST SGALHALDAA
AARYKNNSDP LVIKGDVLRG LGRFDDAEAA YRRAVEINPD DLRGVEGLGA MLEAGGKADE
AITVYQSALA TNPSDIAFAL NTARLQVALD DLSAARETLK RFEASNPENS QVKIALGRVE
FLSGNNEAAT AYFDQAIRIA PENSTQYLLK ARAQLNATEF AAAEETLRGA REIFPDDPQV
PFELASLYGV TRDYARAAEV FEAGAERWPD IMGFHSGLLR ASYRLNDFDA ALSAARVLSS
QPGASAVDHI WHALVLERLE RVDSAITSYD TALELDPTNW LAANNLANLL FDRAPDRALE
LARLAHRTAS ENISVNRTLA WAEFSAGNTE AALALYDSLT PEASDDPIQL FRHGQVLIEA
EEAEAGRILI QKALALDAEF RGAEDARKLL AE
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