| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1333 |
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| Symbol | rhlE |
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| ID | 5711891 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | - |
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| Start bp | 1384375 |
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| End bp | 1385856 |
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| Gene Length | 1482 bp |
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| Protein Length | 493 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 641267245 |
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| Product | DEAD/DEAH box helicase domain protein |
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| Protein accession | YP_001532676 |
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| Protein GI | 159043882 |
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| COG category | [J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG0513] Superfamily II DNA and RNA helicases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.218178 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 0.0904092 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACAAAAT TTTCCGACCT GAACCTCGAT CCGAAGGTTC TCAAAGCCAT ATCCGAAGCC
GGGTACGACA CCCCCACCCC GATCCAGGCC GAGGCGATCC CGCCCGCCCT GGAAGGCCGC
GACGTTCTGG GGATCGCCCA GACCGGGACC GGCAAGACGG CGAGCTTCAC GCTGCCGATG
ATCACGATGC TGCGCAAGGG CCGCGCCCGG GCGCGGATGC CGCGGAGCCT GGTTCTGGCG
CCTACGCGCG AACTGGCCGC GCAGGTGGCA GAGAATTTCG ACATCTATGC CAAGCACACC
AAGCTGACCA AGGCGCTGCT GATCGGCGGC GTGTCGTTCA AGGAACAGGA CCTGCTGATC
GACAAGGGGG TCGATGTTCT GATCGCCACG CCGGGTCGGC TGCTGGATCA TTTCGAGCGC
GGCAAGCTGA TCCTGACGGA TGTGAAGGTG ATGGTGGTCG ACGAGGCCGA CCGGATGCTG
GACATGGGGT TCATCCCCGA TATCGAGAAG ATCTTTCAGC TGACGCCGTT CACCCGCCAG
ACTCTGTTCT TCTCGGCCAC CATGGCGCCG GAGATCGAGC GGATCACCAA CACCTTCCTC
AGCAACCCCG CGCGGGTCGA GGTGGCGCGG CAATCCACGA CCTCGGAGAC GATCACCCAG
GGTCTGGTGC AGTTCAAACC GTCCCGCCGG GACCGGGCGA CCGCCTTCAA GGAGAAGCGC
GAGATGCTGC GGGCGCTGAT CGAGCGGGAG GGCGATGGGT GCCGGAACGC GATCATCTTC
TGCAACCGCA AGATGGATGT GGACGTGGTG GCGAAGTCGC TGATCAAGCA TGGCTATGAC
GCCGCCCCGA TCCATGGCGA CCTGGAGCAG AGCCAGCGGA CCAAGACCCT GGACCAGTTC
CGCGACGGGA CGCTGAAATT CCTTGTGGCC TCGGACGTGG CGGCGCGCGG GCTGGATATT
CCGAACGTGA GCCATGTGTT CAATTTCGAC GTGCCCAGCC ACGCGGAGGA TTATGTCCAC
CGGATCGGGC GCACGGGGCG CGCCGGGCGC AAGGGCACAA CGCTGATGCT GGCGGTGCCG
GCGGATGACA AGCTGCTGGC GGCGATCGAG GACCTGGTGA AGCTGGAGAT CCCGCGGATC
GAGGCGCCGG GGATTTCGGC CCCGCAGGGC GGCCGGTCCA AGGACGAAGA GCGCCCGGAG
CCCGAGAAGC GGGAGCGGCG CAGCCGCAGG CGGACCAAGC CGGAGCCCGC GAAGGCCAAC
GCGCCCGCGC AGGCCCCCGT GGCGGCCCAG GCGGAGACCG CCGTGGCGGA GGCCGAGGAG
GCACCGATCC CGGACGCGGT GCTGCCCGCG GCCCGCAAGA CCGAGACGCC GCAGCGCGGA
CGCAAGGGGC GCGCGCGCGA CACCGGGCCC AAACAGGTGG GCCTGGGCGA TCACGTGCCC
GATTTCCTGC TGCGCAGCTT CTCGGAACGC TCCACGACCT GA
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| Protein sequence | MTKFSDLNLD PKVLKAISEA GYDTPTPIQA EAIPPALEGR DVLGIAQTGT GKTASFTLPM
ITMLRKGRAR ARMPRSLVLA PTRELAAQVA ENFDIYAKHT KLTKALLIGG VSFKEQDLLI
DKGVDVLIAT PGRLLDHFER GKLILTDVKV MVVDEADRML DMGFIPDIEK IFQLTPFTRQ
TLFFSATMAP EIERITNTFL SNPARVEVAR QSTTSETITQ GLVQFKPSRR DRATAFKEKR
EMLRALIERE GDGCRNAIIF CNRKMDVDVV AKSLIKHGYD AAPIHGDLEQ SQRTKTLDQF
RDGTLKFLVA SDVAARGLDI PNVSHVFNFD VPSHAEDYVH RIGRTGRAGR KGTTLMLAVP
ADDKLLAAIE DLVKLEIPRI EAPGISAPQG GRSKDEERPE PEKRERRSRR RTKPEPAKAN
APAQAPVAAQ AETAVAEAEE APIPDAVLPA ARKTETPQRG RKGRARDTGP KQVGLGDHVP
DFLLRSFSER STT
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