| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1332 |
|---|
| Symbol | |
|---|
| ID | 5711890 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | + |
|---|
| Start bp | 1382616 |
|---|
| End bp | 1384286 |
|---|
| Gene Length | 1671 bp |
|---|
| Protein Length | 556 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641267244 |
|---|
| Product | beta-lactamase domain protein |
|---|
| Protein accession | YP_001532675 |
|---|
| Protein GI | 159043881 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0595] Predicted hydrolase of the metallo-beta-lactamase superfamily |
|---|
| TIGRFAM ID | [TIGR00649] conserved hypothetical protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.288718 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 0.0195233 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCAGAGC GGTTGATCTA TCTTCCCCTG GGCGGCGCGG GGGAGATTGG CATGAATGCC
TATGTCTACG GCTACGGTCC CGAGGGGCGC GAGCGGTATA TCCTCGTCGA TCTCGGCGTG
GCGTTTCCGG ACATGGACAC CACCCCGGGC GTGGACCTGA TCACGGCGGA TGTGTCGTGG
CTGGCCGAGC GCGCCGACCG GCTGGAGGCG ATCTTCGTCA CCCACGCCCA CGAGGACCAT
GTGGGCGGCG TGAGCCTGCT GCATGGGCGG CTCAAGGCGC CGGTCTATGC GCGCGCCTTT
ACCGGCAACA TCGCGCGCCG GAAGATGGAG GAAAAGGGCC TCGATCCCGA CGAGGTGCGT
ATCGTCGGCG CCTGGCCGGA GGTGGTCGAG GCGGGACCCT TCAAGGTCTC CTACCTGCCG
GTCTCCCATT CGATCCCCGA GGCCGCGGGC CTCGTGATCG ACAGCCCGGC GGGCCGGGTG
ATCCATACCG GCGATTTCAA GCTCGACCCG ACGCCCATCG TGGGCGAGCC CTTCGATCCC
GACCTGTGGC GCGAGGTGTC GAAGGACGGG GTGCTGGCCC TGGTCTGCGA CAGCACCAAT
GTCTTCTCGC CCAAGCCCGG CCGGTCCGAG GCCGATGTGG CACCCGAGCT GAAACCGCTG
GTGGCCGAGG CCAAGGGCAT GGTGGTGGCC ACGACCTTCG CGTCGAACAT CGCCCGCCTG
CGCTCTCTGG CCGAGGCGGG CCGGGAGGCC GGGCGCTCCG TCGTCCTGCT GGGCCGCGCG
ATGAAGCGCA TGGTCACCGC CGGGGTCGAA AGCGGCGTGC TGACGGATTT CCCGCCCACG
ATCCCGCCCG AGGCCGCGGG TGACATCCCG CGCGACAACC TGATGCTGAT CGTCACCGGC
AGCCAGGGGG AACGCCGCGC CGCCTCCGCG CAATTGGCGC GCGGCAAGTA TCTCGGCTTC
GAGCTGACCG AAGGCGATCT CTTCGTCTTT TCCTCCAAGA CCATTCCCGG CAATGAAAAG
GGCGTCGCCC GGATCATGAA CGCGCTCAGC GAGAAGGGCG TGGACCTCGT GGATGACGAG
GGCGGGCGCT ACCATGTCTC GGGCCATGCC AACCGGCCCG ACCTGCTGGA AATCCACAAG
CTGGTGAACC CGAAGATGGT CGTGCCCATG CATGGCGAAC ACCGGCACCT GCGCGCCCAT
GCGCGCCTGG CCGAGGCCCA GGGCCGGCGC GGCATTCTCG CGCCCAATGG CGCCATGGTC
GTGCTCAGTG GCAACAAGCC CGGCGTGGTG GAGCATGTCG AGACGGGCCG CACCTATCTC
GACGGCTCGC TGCTGGTGGG GGCGTTCGAC GGCGTGGTGC GCGACCGGAT CAAGATGGCG
CTCAACGGCC ATGTGGTCGT GGCGGTGATC ATCGACGAGG GCGACGACCC GATCGAAGAC
GCCTGGGCCG AACTGCGCGG CCTGCCCGAG ATCGGCCAGA GCAAGGCCGA TATGCAGGAG
CTGGTGGAAT ACGAGGTGGG CCAGGTGTTG ACCCGTGCCA ACCGCAAGAC GCTCGACGAT
GACGGGCGGC TGGAAGAGGC CGTGACCCGC GCCGTGCGCC AGGTCTGCGT GACCGAACTG
GGCCGCCGAC CGGAAGTCAG CGTCCTGATC TCACGTCTGA TGGCCGAGTA G
|
|---|
| Protein sequence | MAERLIYLPL GGAGEIGMNA YVYGYGPEGR ERYILVDLGV AFPDMDTTPG VDLITADVSW
LAERADRLEA IFVTHAHEDH VGGVSLLHGR LKAPVYARAF TGNIARRKME EKGLDPDEVR
IVGAWPEVVE AGPFKVSYLP VSHSIPEAAG LVIDSPAGRV IHTGDFKLDP TPIVGEPFDP
DLWREVSKDG VLALVCDSTN VFSPKPGRSE ADVAPELKPL VAEAKGMVVA TTFASNIARL
RSLAEAGREA GRSVVLLGRA MKRMVTAGVE SGVLTDFPPT IPPEAAGDIP RDNLMLIVTG
SQGERRAASA QLARGKYLGF ELTEGDLFVF SSKTIPGNEK GVARIMNALS EKGVDLVDDE
GGRYHVSGHA NRPDLLEIHK LVNPKMVVPM HGEHRHLRAH ARLAEAQGRR GILAPNGAMV
VLSGNKPGVV EHVETGRTYL DGSLLVGAFD GVVRDRIKMA LNGHVVVAVI IDEGDDPIED
AWAELRGLPE IGQSKADMQE LVEYEVGQVL TRANRKTLDD DGRLEEAVTR AVRQVCVTEL
GRRPEVSVLI SRLMAE
|
|---|
| |