Gene Dshi_1329 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDshi_1329 
SymbolnuoN 
ID5711887 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDinoroseobacter shibae DFL 12 
KingdomBacteria 
Replicon accessionNC_009952 
Strand
Start bp1379641 
End bp1381080 
Gene Length1440 bp 
Protein Length479 aa 
Translation table11 
GC content64% 
IMG OID641267241 
ProductNADH dehydrogenase subunit N 
Protein accessionYP_001532672 
Protein GI159043878 
COG category[C] Energy production and conversion 
COG ID[COG1007] NADH:ubiquinone oxidoreductase subunit 2 (chain N) 
TIGRFAM ID[TIGR01770] proton-translocating NADH-quinone oxidoreductase, chain N 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones25 
Fosmid unclonability p-value0.0310541 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATTTCCC AAGATATCGC GATCGTGATG CCCGAAATTG CCCTGGCGAT CTTCGCCATG 
GCCGGGCTGA TGTACGGCGT CTACACGGGC AAGGACCGCA CGGCGCCCCT GCTGGTCTGG
CTGACCGCGG CCGTGTTCGT CGGGCTGGCC TTCTGGATCG GCATCTCGGC AGAGGGCGAC
CGCGTCGCCT TCGGGGGCAT GTTCGTCGAT GACAGTTTCG CGCGCTTCGC CAAGATCACG
ATCCTTCTGT CGGCCGCCGC GATCTTGGTG ATGAGCCTCG ATCACATGTC CAAGCTGGGC
ATCCTTAAAT TCGAATACCC CATCCTGATC GCGCTCGCGG TGGTGGGCAT GATGATGATG
GTCTCCGCGG GCGACCTGAT GGCGCTCTAC ATGGGGCTGG AGCTGCAATC GCTCGCCCTC
TACGTGGTCG CCTCGATCCA CCGCGACGAC TCGCGCTCCA CCGAAGCCGG CCTGAAATAC
TTCGTCCTGG GCGCGCTCAG TTCGGGCATG CTGCTCTATG GTGCGTCGCT GACCTATGGC
TACGCGGGCA CGACGCTCTT CTCGGGGATC ATCACCACGG CGACCGAGGG CGAGATCTCC
ATGGGTCTGC TCTTCGGTCT CGTCTTCCTG ACCGCGGGCC TTGCGTTCAA GGTCTCCGCC
GCGCCCTTCC ACATGTGGAC GCCGGATGTC TACGAAGGCT CGCCCACGCC GGTTACCGCA
CTCTTTGCCA CCGCACCCAA GGTCGCGGCC ATGGCGCTCT TTGCGCGCGT GGTCCATGAC
GCCTTCGGCA ACGCGATCGG CGACTGGCAG CAGATCGTCG CCTTCCTCGC GGTGCTGTCG
ATGTTCCTGG GCTCCATCGC GGCGATCGGC CAGACCGACA TCAAGCGGCT GATGGCCTAC
TCCTCCATCG CCCATATGGG TTTTGCGCTG ATGGGGCTGG CCGCGGGCAC GGTCGGGGGG
GTGCAGGCGA TGCTGATCTA CATGGCGATC TACGTGACCA TGAATATCGG CACCTTCGCC
TTCATCCTGT CGATGGAGAA GGACGGGGTC GCCGTGACAG AGATCGCCTC GCTCAACCAG
TTCGCCAGCC GGGAGCCGAC CAAGGCCATG GCGCTGCTGC TGCTGATGTT CAGCCTGGCG
GGCATCCCGC CGCTGCTGGG CTTTTTCGGC AAGTATACCG TGCTGCTGGC CGCGGTGGAC
GGGGGCCTGA CCTGGCTTGC CATCGCCGGG GTCATGGCCT CGGTGATCGG GGCGTTCTAC
TACCTGCGCA TCGTCTACTA CATGTATTTC GGCAAGGCCG ACGACGCGCT CGAAGGCAGC
ATGCCGATGG TCCAATACGG CTTTCTCATG GCGTCCGCCG TGATCATGCT GGTGGGGATC
GTCAATTTCT TCGGGGTCGA AGGCATGGCG CTGGCCGCGG CGGAATCGCT TGTCCGCTGA
 
Protein sequence
MISQDIAIVM PEIALAIFAM AGLMYGVYTG KDRTAPLLVW LTAAVFVGLA FWIGISAEGD 
RVAFGGMFVD DSFARFAKIT ILLSAAAILV MSLDHMSKLG ILKFEYPILI ALAVVGMMMM
VSAGDLMALY MGLELQSLAL YVVASIHRDD SRSTEAGLKY FVLGALSSGM LLYGASLTYG
YAGTTLFSGI ITTATEGEIS MGLLFGLVFL TAGLAFKVSA APFHMWTPDV YEGSPTPVTA
LFATAPKVAA MALFARVVHD AFGNAIGDWQ QIVAFLAVLS MFLGSIAAIG QTDIKRLMAY
SSIAHMGFAL MGLAAGTVGG VQAMLIYMAI YVTMNIGTFA FILSMEKDGV AVTEIASLNQ
FASREPTKAM ALLLLMFSLA GIPPLLGFFG KYTVLLAAVD GGLTWLAIAG VMASVIGAFY
YLRIVYYMYF GKADDALEGS MPMVQYGFLM ASAVIMLVGI VNFFGVEGMA LAAAESLVR