| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1311 |
|---|
| Symbol | nuoD |
|---|
| ID | 5711869 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | + |
|---|
| Start bp | 1363417 |
|---|
| End bp | 1364631 |
|---|
| Gene Length | 1215 bp |
|---|
| Protein Length | 404 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 641267223 |
|---|
| Product | NADH dehydrogenase subunit D |
|---|
| Protein accession | YP_001532654 |
|---|
| Protein GI | 159043860 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0649] NADH:ubiquinone oxidoreductase 49 kD subunit 7 |
|---|
| TIGRFAM ID | [TIGR01962] NADH dehydrogenase I, D subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.00990981 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 0.0474356 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATGGACG GCACGAATTT CGACGATGCC CTCACGGGCG AGCAGAAGAT CCGCAACTTC
AACATCAACT TCGGGCCTCA GCACCCGGCG GCCCACGGGG TGCTGCGGCT GGTGCTGGAG
CTGGACGGCG AGATCGTGGA GCGGTGCGAT CCCCATATCG GGCTTCTGCA CCGCGGCACC
GAAAAGCTGA TGGAGAGCCG CACCTACCTG CAGAACCTGC CCTATTTCGA CCGGCTCGAC
TACGTCGCCC CGATGAACCA GGAGCACGCC TGGTGCCTGG CCATCGAGAA GCTGACCGGC
ACGGTCGTGC CCCGGCGCGG CTCCCTGATC CGGGTGCTCT ATTGCGAGAT CGGGCGCATC
CTGAACCATC TGCTGAACAT CACCACGCAA GCGATGGACG TGGGCGCGCT GACCCCGCCG
CTCTGGGGCT TCGAGGAGCG CGAGAAGCTC ATGGTGTTCT ACGAGCGGGC CTGCGGCGCG
CGGCTTCACG CGGCCTATTT CCGGCCCGGT GGCGTGCACC AGGACCTGCC GCCGGACCTG
CTGGACGACA TCGAGGCCTG GAGCCACGAG TTCCCGTCCG TCATGGACGA TATCGACGGG
CTTCTGACGG AAAACCGGAT CTTCAAGCAG CGCAATTGCG ACATTGGCGT GGTCACCGAG
GAGGAGATCC TCGAATGGGG TTATTCCGGC GTGATGGTGC GCGGCTCGGG CCTGGCCTGG
GATCTGCGCC GCGCGCAGCC CTATGAATGC TACGACGAGT TCGACTTCCA GATCCCCGTG
GGCAAGAACG GCGACTGCTA CGATCGCTAT CTCGTGCGGA TGCAGGAGAT GCGCGAGAGC
CTCAAGATCA TCCAGCAGGC CATCGTCAAG CTGCGCGAGA CCAAGGGCGA CGTGCTGGCG
CGCGGCAAGC TGACCCCACC GTCGCGGGCG GACATGAAGA CCTCGATGGA GGCGCTGATC
CATCACTTCA AGCTCTATAC CGAGGGGTTC CACGTGCCCG CGGGTGAGGT CTATGCCGCG
GTCGAGGCGC CCAAGGGCGA GTTCGGCGTG TTCCTGAAAT CCGATGGCAC CAACAGGCCC
TACCGCGCCA AGATCCGCGC GCCCGGGTAT CTGCACCTGC AATCGATGGA CCATGTGGCC
AAGGGTCACC AGCTGGCGGA CGTGGCCGCG ATCATCGGCA CCATGGACGT GGTTTTCGGG
GAGATCGATC GATGA
|
|---|
| Protein sequence | MMDGTNFDDA LTGEQKIRNF NINFGPQHPA AHGVLRLVLE LDGEIVERCD PHIGLLHRGT
EKLMESRTYL QNLPYFDRLD YVAPMNQEHA WCLAIEKLTG TVVPRRGSLI RVLYCEIGRI
LNHLLNITTQ AMDVGALTPP LWGFEEREKL MVFYERACGA RLHAAYFRPG GVHQDLPPDL
LDDIEAWSHE FPSVMDDIDG LLTENRIFKQ RNCDIGVVTE EEILEWGYSG VMVRGSGLAW
DLRRAQPYEC YDEFDFQIPV GKNGDCYDRY LVRMQEMRES LKIIQQAIVK LRETKGDVLA
RGKLTPPSRA DMKTSMEALI HHFKLYTEGF HVPAGEVYAA VEAPKGEFGV FLKSDGTNRP
YRAKIRAPGY LHLQSMDHVA KGHQLADVAA IIGTMDVVFG EIDR
|
|---|
| |