Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dshi_1301 |
Symbol | mccA |
ID | 5711859 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dinoroseobacter shibae DFL 12 |
Kingdom | Bacteria |
Replicon accession | NC_009952 |
Strand | + |
Start bp | 1355325 |
End bp | 1357310 |
Gene Length | 1986 bp |
Protein Length | 661 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 641267213 |
Product | carbamoyl-phosphate synthase L chain ATP-binding |
Protein accession | YP_001532644 |
Protein GI | 159043850 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG4770] Acetyl/propionyl-CoA carboxylase, alpha subunit |
TIGRFAM ID | [TIGR00514] acetyl-CoA carboxylase, biotin carboxylase subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 0.206291 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 29 |
Fosmid unclonability p-value | 0.197906 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGTTTGAGC GTATCCTGAT CGCGAACCGG GGCGAGATCG CCTGCCGCGT CATCGACACC TGTCGGCGGC TCGGGGTGCA GACCGTGGCG GTGCATTCCG ACGTGGATGC CGGGGCGCGG CATGTGGCCA TGGCGGATAT GGCGGTGAAC CTCGGCGGGG CCGCGCCGCG TGACAGCTAC CTGCGGGGGG AGGCGATCAT CGCCGCGGCC AGGGCGACCG GGGCGGAGGC GATCCATCCC GGTTACGGCT TTCTGTCGGA GAACCCGGAT TTCGTGGAGG CCGTGGCGGC GGCCGGGCTG GTCTTCATCG GGCCTTCGGC GGCGGCGATC CGGGCGATGG GCCTGAAGGA TGCCGCCAAG GCGCTGATGG CGGAGGCGGG CGTGCCGGTT GTGCCCGGCT ACCAGGGGGC GGATCAGGAC CCCGCGCGCC TGGCGGCGGA GGCCGAGGCG ATCGGTTATC CGGTGCTGAT CAAGGCCGTG GCGGGCGGCG GCGGCAAGGG CATGCGCCGG GTCGAGGGGC CGGAGGGGTT CGCCGGTGCG CTGGAGGCGG CCCGGGCCGA GGCGCGCGGT GCGTTTGGCA ATGACCATGT GCTGTTGGAG AAATACGTGG CGACGCCGCG CCATATCGAG CTGCAGGTGT TCGGGGATGG TGCGCGGGCG GTGCATCTCT TCGAGCGGGA CTGTTCGCTC CAGCGGCGTC ACCAGAAGGT GATCGAGGAA GCGCCAGCCC CCGGCATGAC GCCGGAGATG CGCGCGGCCA TGGGGGCGGC GGCGGTGCGG GCGGCGGAGG CCATCGGCTA TGCCGGGGCG GGCACGGTGG AGTTCATCGT GGACGCCAGC GACGGGCTGC GCCCGGATCG GTTCTGGTTC ATGGAGATGA ACACGCGCCT GCAGGTGGAG CATCCGGTGA CCGAGGCGGT GACCGGCGTC GACCTGGTGG CGTGGCAATT GCGCGTGGCG TCGGGGGAGC CTTTGCCCGC GCGGCAAGAG GATCTGTCCT TGCGGGGGCA CGCCTTCGAG GCGCGGCTTT ATGCGGAGGA CGTGCCCAAG GGCTTTCTGC CTGCGACCGG GCGGCTCACC CATCTGGCCT TTCCGGCGGA TGCGCGGATC GAAACCGGGG TGCGCGCGGG CGACGAGATC AGCCCGTGGT ACGATCCGAT GATCGCCAAG CTGGTGGTCC ATGGCCCGAC GCGGCAAAGC GCCTTGCGCA AGCTCGACCG GGTGCTGGCG GGGTGCGAGG TGGCCGGGTC GGTGACGAAC CTCGCCTTTC TGCGGGCGTT GGCGCGGCAT GGCGGGTTTT TTGCGGGCGA GGTGGATACC GGCCTGATCG ACCGGGAGGT CGAGACCCTG TCGCCCGCGC CGGTGCCGTG CAGCCGGGCG CGCGCGCTGG CGGCGCTCGG GGCGGCGGGG CTCCATGAAG GGGGGCCGGA CGGGGCGGGG TTCACGCTAT GGGCGCCGCT GGTGCAGGCG CAGGGGCTGC GGTTCGGCGA GGCGGAGATC GAGGCCCGGA TCGAGACACG CGGGGCCGGC AGTTTCCGGG TGGGCATCGG GGAGGCGACC CACGAGATCA CCCGGCGCGG CGGGGCCTGG TGGGTGGACG GCGCACCGAC ACCGGCGCGG ATCGTCGTCC ATGCCGCGGG CGTCAGCGTG TTCTGGGGCA ACAATTACCA CTTCACCGCG CCCGACCCGC TGCACCGGGC CGGGGCGGCG GGACCGGGGG CGGGCCATGT GGAGGCGCCG ATGCCGGGGC TGGTGAAGGC GGTGTTCGTC GCCCCCGGCG ATACCGTGGC GCAGGGCGCG CGGCTCGCGA TCCTGGAGGC GATGAAGATG GAGCATACGC TGACGGCGGG CCGGGACGGG GTGGTGTCGG AGGTTCTGGT GGCCGAGGGC GCACAGGTCA GCGCCGGAGC GCCGCTGATC CTGCTGGCCC CCGACGAAAC CCCAAACGAG CGCACGGATG AGAGCCCGGA GGAGGCCGCC GAATGA
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Protein sequence | MFERILIANR GEIACRVIDT CRRLGVQTVA VHSDVDAGAR HVAMADMAVN LGGAAPRDSY LRGEAIIAAA RATGAEAIHP GYGFLSENPD FVEAVAAAGL VFIGPSAAAI RAMGLKDAAK ALMAEAGVPV VPGYQGADQD PARLAAEAEA IGYPVLIKAV AGGGGKGMRR VEGPEGFAGA LEAARAEARG AFGNDHVLLE KYVATPRHIE LQVFGDGARA VHLFERDCSL QRRHQKVIEE APAPGMTPEM RAAMGAAAVR AAEAIGYAGA GTVEFIVDAS DGLRPDRFWF MEMNTRLQVE HPVTEAVTGV DLVAWQLRVA SGEPLPARQE DLSLRGHAFE ARLYAEDVPK GFLPATGRLT HLAFPADARI ETGVRAGDEI SPWYDPMIAK LVVHGPTRQS ALRKLDRVLA GCEVAGSVTN LAFLRALARH GGFFAGEVDT GLIDREVETL SPAPVPCSRA RALAALGAAG LHEGGPDGAG FTLWAPLVQA QGLRFGEAEI EARIETRGAG SFRVGIGEAT HEITRRGGAW WVDGAPTPAR IVVHAAGVSV FWGNNYHFTA PDPLHRAGAA GPGAGHVEAP MPGLVKAVFV APGDTVAQGA RLAILEAMKM EHTLTAGRDG VVSEVLVAEG AQVSAGAPLI LLAPDETPNE RTDESPEEAA E
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