| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1295 |
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| Symbol | |
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| ID | 5711853 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | + |
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| Start bp | 1349154 |
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| End bp | 1349828 |
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| Gene Length | 675 bp |
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| Protein Length | 224 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 641267207 |
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| Product | HAD-superfamily hydrolase |
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| Protein accession | YP_001532638 |
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| Protein GI | 159043844 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0546] Predicted phosphatases |
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| TIGRFAM ID | [TIGR01449] 2-phosphoglycolate phosphatase, prokaryotic
[TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
[TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 0.647127 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 0.296731 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCTCTTT CGGTGATCTT CGATCTCGAC GGCACCCTGG CCGATACCAG TGCGGACCTG
ATCGCCGCGG CCAATGCCTG TTTCGCGGCC CGCGGGCAGG GCGCGCCCCT CGACCCGCTG
GCCGATGCGG CGACGGCCTT CGCCGGCGGG CGCGCGATGC TGCGGCTGGG GATGGAGCGG
CTCGGCCAGG GCTGGAGCGA GGCGGATGTG GACCGGGACT ATCCCGTCCT GCTGGAAGCC
TATGCCGGGG CCATCGATGT GCATACGCGG CTCTATCCCG GCGCGATGGC GGCGGTGGAG
CGGTTGTGGG GCGCGGGGCA CAAGGTGGGC ATCTGCACCA ACAAGCCCGC GGGGCTGGCC
GAGACGCTGA TGACCCGGCT GGGGGTGCGC GACCGGTTCG CCGCCCTGGT GGGGGCCGAC
ACCCTGCCCG TGCGCAAGCC CGACCCCGCG CCCCTGTTCG AGACCATCGC GCGGGTGAGC
GGCGATCCGG CGCGCGCGGT GCTGATCGGC GACACGGTGA CCGACCGGGA AACCGCGCGC
GCGGCGGGCA TCCCGTCGGT TCTGGTGACC TTCGGGCCGA CCGGGCGCGC GGTGGCCGAG
CTGGCGCCCG AGGCGCTGCT CGATCATTAC GACGGGCTGG ACGCGGTGCT TTCGGGGCTC
CATCCCGGCC ATTGA
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| Protein sequence | MSLSVIFDLD GTLADTSADL IAAANACFAA RGQGAPLDPL ADAATAFAGG RAMLRLGMER
LGQGWSEADV DRDYPVLLEA YAGAIDVHTR LYPGAMAAVE RLWGAGHKVG ICTNKPAGLA
ETLMTRLGVR DRFAALVGAD TLPVRKPDPA PLFETIARVS GDPARAVLIG DTVTDRETAR
AAGIPSVLVT FGPTGRAVAE LAPEALLDHY DGLDAVLSGL HPGH
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