Gene Dshi_1292 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDshi_1292 
Symbol 
ID5711850 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDinoroseobacter shibae DFL 12 
KingdomBacteria 
Replicon accessionNC_009952 
Strand- 
Start bp1345302 
End bp1345850 
Gene Length549 bp 
Protein Length182 aa 
Translation table11 
GC content69% 
IMG OID641267204 
Productpyridoxamine 5'-phosphate oxidase-related FMN-binding 
Protein accessionYP_001532635 
Protein GI159043841 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value0.632412 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones33 
Fosmid unclonability p-value0.491958 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCCAGGC AGTTCCCCCG CATCGGCCTC GGCCACCAGG CGATGATCGA AGCCCAGAAG 
GTCTTCTTCG TCGCCACCGC CGCCGAGACC GGCCGGATCA ATCTCAGCCC CAAGGGCATG 
GACAGTCTGC GCGTGCTGGG GCCGAACCGC CTCGCCTGGC TCAACGTCAC CGGCTCGGGC 
AACGAGACCG CCGGGCACCT GCGCCAGAGC CCGCGCATGA CGCTGATGTG GTGCAGCTTC 
GATGCCACCC CGATGATCCT GCGCGTCTAT GGCACCGCCC GCGCCGTGCA CCGCCGCGAT 
GCGGATTGGG ACGCCCTTGC CGCGCTCTTC CCCGGCGGGC CGGAAAAACG CCAGGTCTTC 
GACATGGATG TCGAGATGGT GCAAACCTCC TGCGGCTACG CGGTCCCCAT GGCCGACGAG 
ATGACCGAGC GGGACACCCT GAAGACCTGG GCCGCCGCCC GGGGCGCGGA CGGGATCCGC 
GCATATTGGG CCGAGACCAA CGCCGAAACC CTCGACGGTG CCCCCACCGG GATCGAGCGG 
AACCTGTGA
 
Protein sequence
MARQFPRIGL GHQAMIEAQK VFFVATAAET GRINLSPKGM DSLRVLGPNR LAWLNVTGSG 
NETAGHLRQS PRMTLMWCSF DATPMILRVY GTARAVHRRD ADWDALAALF PGGPEKRQVF 
DMDVEMVQTS CGYAVPMADE MTERDTLKTW AAARGADGIR AYWAETNAET LDGAPTGIER 
NL