| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1288 |
|---|
| Symbol | |
|---|
| ID | 5711846 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | + |
|---|
| Start bp | 1341315 |
|---|
| End bp | 1342481 |
|---|
| Gene Length | 1167 bp |
|---|
| Protein Length | 388 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 641267200 |
|---|
| Product | amidohydrolase |
|---|
| Protein accession | YP_001532631 |
|---|
| Protein GI | 159043837 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1473] Metal-dependent amidase/aminoacylase/carboxypeptidase |
|---|
| TIGRFAM ID | [TIGR01891] amidohydrolase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.0866095 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 0.389955 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCATCA AGAACCGGTT TGCCGAACTT CTGCCCGAGA TCACGGCCTG GCGGCAGGAT
TTCCACGCCC ATCCCGAACT GCTCTTCGAC ACGCACCGGA CCGCCGGGAT CGTGGCCGAG
AAGCTCCACG CCTTCGGCTG CGACGAGGTC GTCGAAGGCC TCGGGCGCAC GGGCGTCGTC
GGTGTCATCA AGGGGCGGCA GACCGGCTCC GGCCGGGTCA TCGGCCTGCG CGCCGACATG
GACGCCCTGC CGATCCCCGA GGAAACCGGC GTGCCCTATG CCTCCAAGGT GCCGGGCAAG
ATGCATGCCT GCGGCCATGA CGGGCACACC GCGATGCTGC TGGGGGCGGC CAAATACCTG
GCCGAGACGC GCAATTTCGA TGGCACCTGC GTGGTGATCT TCCAACCCGC CGAAGAAGGT
GGCGGCGGCG GGCGCGAAAT GGTCGAGGAC GGGCTGATGG AACGCTTCGG CATCGAAGAG
ATCTACGGCA TGCATAACTG GCCCGGCGTG CCCACGGGCA GCTTCGCGAT CCGCCCGGGC
CCGTTCTTCG CGGCCACGGA CCAGTTCGAC ATCGTGATCA AGGGCAAGGG CGGGCACGCC
GCCAAGCCGC AGGAAACCGT GGATCCGACC GTGGCGGCCA GCCAGGTGGT CCTTGCCCTG
CAAACCATTG CCAGCCGCAA TGCCGACCCG ATCCGGCAGA TCGTGGTGTC GGTCACGTCC
TTCCAGACCT CCAGCACCGC GTTCAACGTG ATCCCGCAGC AGGTGGCGTT GAAGGGCACC
GTGCGGACCC TGGACGAGGA CGTGCGCGCC ATGGCCGAGC GGCGTCTGAC CGAGATCGCC
ACCGGCATTG CCCAGGCCAT GGGGGCCGAG GCCGAGGTGC AGTATCACAA GGGCTATCCT
GTCATGGTGA ATTCCGGGCC GGAGACGGAA TTTGCCGCGG ATGTCGCGCG CAAGGTCTCG
GGCGACTGCG CCGAGGCGCC GCTGGTCATG GGGGGCGAGG ATTTCGCCTA TCTGCTGAAC
GCGCGGCCCG GGGCCTATAT CCTGGTGGGC AATGGGGACA CGGCGGCGGT CCATCACCCC
GCCTACAACT TCAATGACGA GGCGATCCCG GCGGGCTGTT CCTGGTGGGC CGAGATCGTC
GAGACGCGGC TGCCCATCGC CTCCTGA
|
|---|
| Protein sequence | MPIKNRFAEL LPEITAWRQD FHAHPELLFD THRTAGIVAE KLHAFGCDEV VEGLGRTGVV
GVIKGRQTGS GRVIGLRADM DALPIPEETG VPYASKVPGK MHACGHDGHT AMLLGAAKYL
AETRNFDGTC VVIFQPAEEG GGGGREMVED GLMERFGIEE IYGMHNWPGV PTGSFAIRPG
PFFAATDQFD IVIKGKGGHA AKPQETVDPT VAASQVVLAL QTIASRNADP IRQIVVSVTS
FQTSSTAFNV IPQQVALKGT VRTLDEDVRA MAERRLTEIA TGIAQAMGAE AEVQYHKGYP
VMVNSGPETE FAADVARKVS GDCAEAPLVM GGEDFAYLLN ARPGAYILVG NGDTAAVHHP
AYNFNDEAIP AGCSWWAEIV ETRLPIAS
|
|---|
| |