| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1271 |
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| Symbol | |
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| ID | 5711829 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | + |
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| Start bp | 1320915 |
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| End bp | 1321811 |
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| Gene Length | 897 bp |
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| Protein Length | 298 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 641267183 |
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| Product | xylose isomerase domain protein TIM barrel |
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| Protein accession | YP_001532614 |
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| Protein GI | 159043820 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1082] Sugar phosphate isomerases/epimerases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 30 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 0.713181 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGACCATTC GTATCGGCAA TGCGCCCTGT TCCTGGGGTG TGGAATTCGC GGGCGATCCG
CGCAATCCCG ACTGGCGGCA GGTTCTGCGC GAGACCGCGG CAGCGGGCTA CACGGGCATC
GAGCTGGGCC CGATCGGCTT CATGCCCGAG GACCCGCCAC AGGTCGCCGA CGCCCTCGCC
GAACATGAGC TGGAGCTGAT CGGCGGCGTC GTCTTTCGCC CCTTCCATGA CCGGGCGGCG
TGGGAGGAGG TGCTGGATGC TTCCGTCCGC ACCTGCAAGG CGTTGGTCGC CCATGGCGCG
CAGCATCTCG TGCTGATCGA CTCGATCTCG CCGCGCCGCG CGCCCACGGC GGGTCGGGCA
GGGGCTGCCG AACAGATGGA CGCGGTGGAA TGGGCCGCCT TTCGCGACCG CATCGCCCAT
GTGGCGCGGA TGGGAGCCGA TGAGTACGGG CTGACCGTGG GCATCCATGC CCATGCCGCG
GGCTTCATGG ATTTCGAGCC GGAGCTGGAG CGCCTGCTGG ACGAGGTGGA TGACAGCATC
CTCAAGATCT GCTTCGACAC GGGCCACCAT TCCTATGCGG GCTTCGACCC GGTGGCCTTC
ATGCAGCGGC ATTTGCCGCG CATCAGCTAC ATGCATTTCA AGGATATCGA TCCCGCCGTG
AAGGCGAACG TCATCGCGCG GGGGACCGGA TTCTACGACG CCTGCGGCCA GGGAATTTTC
TGTAATCTCG GTGAAGGCGA CGTGAATTTC CCGCGCGTCC GCCAATTGCT GATCGATCAC
GGGTTCGACG GTTGGTGCAC GGTGGAACAG GACTGCGATC CGACCCTGCC GGACACCGAC
CCCTTCGGCG ATGCCATGAC CAACCGCGCC TATCTGCGCG CCATCGGATT TGAATGA
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| Protein sequence | MTIRIGNAPC SWGVEFAGDP RNPDWRQVLR ETAAAGYTGI ELGPIGFMPE DPPQVADALA
EHELELIGGV VFRPFHDRAA WEEVLDASVR TCKALVAHGA QHLVLIDSIS PRRAPTAGRA
GAAEQMDAVE WAAFRDRIAH VARMGADEYG LTVGIHAHAA GFMDFEPELE RLLDEVDDSI
LKICFDTGHH SYAGFDPVAF MQRHLPRISY MHFKDIDPAV KANVIARGTG FYDACGQGIF
CNLGEGDVNF PRVRQLLIDH GFDGWCTVEQ DCDPTLPDTD PFGDAMTNRA YLRAIGFE
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