| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1269 |
|---|
| Symbol | iolD |
|---|
| ID | 5711827 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | - |
|---|
| Start bp | 1317836 |
|---|
| End bp | 1319701 |
|---|
| Gene Length | 1866 bp |
|---|
| Protein Length | 621 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 641267181 |
|---|
| Product | thiamine pyrophosphate protein central region |
|---|
| Protein accession | YP_001532612 |
|---|
| Protein GI | 159043818 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG3962] Acetolactate synthase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 0.710125 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGCGAGG ACACCATCCG CCTGACAACC GCGCAGGCGA TCATACGCTA TCTGAACGCA
CAGTTCATCG AGACAGACGG CACGCGGCAG CGGGTCTGCG GCGGGGGTTT CGGCATTTTC
GGCCATGGCA ATGTGACTTG TCTGGGCGAA GCGCTCCATG ATCATCGCGA AACGTTGCCG
CTTTATCGCG GCCAGAACGA GCAAAGCATG GGGTTCGCCG CGGCGGCCTA TGCCAAGTAT
CACCTGCGGC GGCGATTCAT GTTCTGCACG GCGAGCGCGG GACCGGGTAC GGCGAACCTG
CTAACGGCCT CTGCGCTCGC CCATGCCAAC CGTTTGCCGA TGCTGATGCT CTGCGGCGAC
ACGTTCCTGA CCCGCCTGCC CGATCCGGTG CTGCAGCAGT TGGAGCATTA CGGCAACCCG
GCGCTGGGTC TGAACGATGC GTTCCATGCG GTCACCCGGT ATTGGGATCG CATCACGCAC
CCCGCGCAGG TGATCCAGTC CCTGCCCGCG GCGCTGGCCA CCATGCTGGA CCCGGCCGAT
TGCGGCCCGG CCTTCCTCGC CCTGCCCCAG GATGTGCAGG GCTGGGCCTA TGACTATCCA
CGCGCGTTTT TCGAGGAAAA GACACACCGC ATCCGCCGGA TCACGCCCGA CGCGGACGAG
GTGGCGGAGG CTGCGGCTTT GCTGCGCAGC GCCGAGCGGC CGGTGATCAT CGCAGGCGGC
GGTGTGCAGT ATTCCGGTGC GGTGGCCGAG TTGACCGGTT TCGCCGAAGC CCATGGCATT
CCGGTGATCG AAACCATCGC GGGGCGCGCG AACCTGCTGG CCGACCATCC GCTGAATATC
GGGCCCGTGG GTGTCACAGG CTCGGATAGC GCCAATGCGA TCGCCGAGCA GGCGGATGTG
ATCCTCGCGG TCGGCACCCG GCTGCAGGAT TTCACCACCG GGTCCTGGAC CGCCTTCGCG
CAGGAGGCTC GGTTCATCGC CCTCAACGCC GCGCGGCACG ATGCGGGCAA GCACCGGGCC
CTGCCTATCG TCGGGGATGC CAAACTTGGC CTGGTGGCGC TGGAGGCCGC CTTGGGTGAC
TACCGATGCC CCGAGGCCTG GCGCAACTAC GCCCAGACCG AGCGCAAGGG CTGGGACGCC
TATGTGGCCG ACAATGTCCG CCCCGGAAAC CGACCCAATT CCTACGCCCA GGCCATCGGC
GTGGTGAACG CGCTGTGTGA GCCGCGCGAC CGGGTCGTGG CGGCGGCGGG CGGTCTTCCG
GCGGAGGTCA CCGCGAACTG GCGCACGTTG GATATCGGCA CCGTGGACGT GGAATTCGGC
TTTTCCTGCA TGGGCTACGA GATTGCGGGC GGCTGGGGCG CGCGCATTGC CCAGACGGAG
GTGGAGCCCG AGGCAGACAC CATCGTCTTT TGCGGGGATG GCAGCTACCT CTTGATGAAC
TCCGACATCT ACTCATCTGT TCTGACGCGG AAAAAGATGA TCGTTCTGGT GCTCGACAAT
GGCGGTTTCG CGGTCATCAA CAAGCTGCAG AACAACACCG GGAACGAGAG CTTCAACAAC
CTTCTGGCCG ACGCCCCCAC GATCCCGGAG GCTTTCGGGG TCGACTTCGT GGCCCATGCC
GCCGCCATGG GGGCGGAGGC CACGCAGGTG GCCAATGCCG ACGAGTTGGC CGAAGCCTTC
AAGGCTGCAA AAGCCTCGGA CAAGACCACC GTCATCGTGA TGAGCGTCGA TGCCTATGAC
GGCTGGACGA CCCAGGGCCA TACATGGTGG GAGGTCGGCA CCCCCCATGT CACCGACAAC
CCCAAGGTGC GCGAAAAGCA CCTGGAGATC GAGGCGGAGC GCGCCAAGCA GCGGCGCGGC
ATATGA
|
|---|
| Protein sequence | MREDTIRLTT AQAIIRYLNA QFIETDGTRQ RVCGGGFGIF GHGNVTCLGE ALHDHRETLP
LYRGQNEQSM GFAAAAYAKY HLRRRFMFCT ASAGPGTANL LTASALAHAN RLPMLMLCGD
TFLTRLPDPV LQQLEHYGNP ALGLNDAFHA VTRYWDRITH PAQVIQSLPA ALATMLDPAD
CGPAFLALPQ DVQGWAYDYP RAFFEEKTHR IRRITPDADE VAEAAALLRS AERPVIIAGG
GVQYSGAVAE LTGFAEAHGI PVIETIAGRA NLLADHPLNI GPVGVTGSDS ANAIAEQADV
ILAVGTRLQD FTTGSWTAFA QEARFIALNA ARHDAGKHRA LPIVGDAKLG LVALEAALGD
YRCPEAWRNY AQTERKGWDA YVADNVRPGN RPNSYAQAIG VVNALCEPRD RVVAAAGGLP
AEVTANWRTL DIGTVDVEFG FSCMGYEIAG GWGARIAQTE VEPEADTIVF CGDGSYLLMN
SDIYSSVLTR KKMIVLVLDN GGFAVINKLQ NNTGNESFNN LLADAPTIPE AFGVDFVAHA
AAMGAEATQV ANADELAEAF KAAKASDKTT VIVMSVDAYD GWTTQGHTWW EVGTPHVTDN
PKVREKHLEI EAERAKQRRG I
|
|---|
| |