Gene Dshi_1253 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDshi_1253 
Symbol 
ID5711811 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDinoroseobacter shibae DFL 12 
KingdomBacteria 
Replicon accessionNC_009952 
Strand
Start bp1300089 
End bp1300952 
Gene Length864 bp 
Protein Length287 aa 
Translation table11 
GC content68% 
IMG OID641267165 
Producttranscriptional regulator 
Protein accessionYP_001532596 
Protein GI159043802 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG0394] Protein-tyrosine-phosphatase
[COG0640] Predicted transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.0585398 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones33 
Fosmid unclonability p-value0.522722 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAATCAA TAGATGCCAC CCACGCTTTC GATGCGCTGA GCCATCCCGC ACGGTTGGAG 
GTATTCCGCC TGTTGGTGCG GCGCGGGCCG AGCGGGGTGC GCCCGTCCGA CATTGCCGCG
GCCTTGGGAC TCAAGCCCAA TACCTTGTCG GTCTACCTTG CGGCGCTGCA GGCCGCGGGG
CTGGTTGCCT CCCAGCGGGC GGGTCGGGCG GTGCTCTACC GGGCGGAACT GCGCCGGGTG
GGCGCGTTGG TGGATTACCT CGTCGATGAT TGCTGCCGGG GACGGCCTGA CCTGTGCAGC
ACCCACCTGG ACATGACACC GATGTCGCGC GACGGGGCGG CGCGTGAGGC CCCGTTTCAT
GTGCTTTTCC TCTGTACCGG AAACTCGGCC CGGTCGATTT TCGCCGAAGC GCTGCTGACC
GAGCTTGGCG GGGCGCGCTT CGTGGCGCAT TCCGCTGGGC TTGATCCGGC CGCCGGTCTC
AACCCCCGGG CGGTCGAGGT CTTGGAGCGG GCAGGCCACG ACGTCTCGAG CCTGCGCGCC
AAGCCCGTGT CCGAGTTCCA GCGATCCGAT GCGCCGCGGA TGGATTTCGT CTTCACGGTC
TGTGACCGGG CGGCGAACGA GCATTGCCCC CCCTGGCCGG GCCAGCCGAT GACGGGCCAT
TGGGGCCTGC CGGACCCGGT CGCCGCCCAA GGGACCGAGG CGGAGAAATC TCTCGCCTTC
GCCCAGACCT ACGCCCAGAT GCGCCGCCGG ATCGAAGGTT TCGTGGCCCT GCCGCTGCAA
TCTCTGGACC GACTGGCACT GCAACAGCGC CTCGATGAGA TCGGGCGGCG CCCATCTTTC
CAAAGCCGAG AGACACTGAC ATGA
 
Protein sequence
MESIDATHAF DALSHPARLE VFRLLVRRGP SGVRPSDIAA ALGLKPNTLS VYLAALQAAG 
LVASQRAGRA VLYRAELRRV GALVDYLVDD CCRGRPDLCS THLDMTPMSR DGAAREAPFH
VLFLCTGNSA RSIFAEALLT ELGGARFVAH SAGLDPAAGL NPRAVEVLER AGHDVSSLRA
KPVSEFQRSD APRMDFVFTV CDRAANEHCP PWPGQPMTGH WGLPDPVAAQ GTEAEKSLAF
AQTYAQMRRR IEGFVALPLQ SLDRLALQQR LDEIGRRPSF QSRETLT