| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1235 |
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| Symbol | xylB1 |
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| ID | 5711793 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | + |
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| Start bp | 1279366 |
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| End bp | 1280808 |
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| Gene Length | 1443 bp |
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| Protein Length | 480 aa |
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| Translation table | 11 |
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| GC content | 75% |
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| IMG OID | 641267147 |
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| Product | xylulokinase |
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| Protein accession | YP_001532578 |
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| Protein GI | 159043784 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1070] Sugar (pentulose and hexulose) kinases |
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| TIGRFAM ID | [TIGR01312] D-xylulose kinase |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 0.757817 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 0.113808 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTTCTTG GGCTGGATAT CGGAACATCG GCGGTCAAGG GGCTTGTGTG GGACGGGGCG
CGGGTGCTGG GGGCTGCCTC GGCACCGCTG AAGGTGCAGG TGCCGGTACC GGGCGCGAGC
GAGCAGGACC CCGAGGCGTG GTGGCGCGGG ATCCTGGCGG TCTGCGCCGA GTTGTCCGCG
CAGCCCGGCT GGGCGGAGGT GTCGGCCATC GGGCTGTCGG GGCAGATGCA CGGGGCGGTG
TGCCTTGGGC CCGATGGCGC GGTGCTGCGC CCGGCGATCC TGTGGAACGA CAATCGGGCG
GTGCGGGAGG CGGCGGAAAT GGCCGCGCTG CCGGGCCTGG CCGCGCGGGT GGGTGTGCCG
CCCATGCCGG GCTTTCCCGC GCCCAAGCTG GCGTGGCTTG CGCGGACCGA GCCGGAGCTG
CATGCCGCCA CGACGATGGT GATGCAGGCC AAGGACTGGG TGGGCATGCG GCTGCACGGG
CGGGCGGTGA CGGAGTATTC CGAGGCGGCG GGCACGCTCT GGCTCGACCA GGCGGCGCGG
GACTGGGACC GGGAAGCCCT GGCATTCAGT GGCCTGGAGC GCGCGCAGAT GCCCGCGCTC
GGGGCCGGGA CGGACCTCGC CGGGCCGCTG AGCGCGGCGG CGGCGGCCGC CCTGGGTCTC
AAGCCCGGGG TGCCGGTGAT CCGGGGGGGC GGCGATGCCA TGGTCGGGGC GGCAGGGATC
GGGGTGGTGG CCCCGGGACA GGCGATGATC TCGCTGGGGA CCTCGGGGCA GTACCTGGTG
GCGTCGGAGG CGCATCGGCC CAATCCCGCC GGGCTGGTCC ACAGCTTTGC GCATTGTGTG
CCGGGCGCTT ACATCCAGAT GGCGGCGATG CTGAACGGGG CAGCACCCAT GGCATGGCTG
GCGGGGGTGC TCGGTCGGTC CGTGCCGGAC CTCCTCGCAG CGGCGGAGAC GGCCGACCCG
GCGCATGTGC CGCTCTTTCT GCCTTACCTG ACCGGCGAGC GGACGCCCCA TGGCGACCCG
GAGGCGCGGG CGGGGTTCGA GGGGCTGAGC CATGGCTCCG GCCCGGGCGA GATGATGCGT
GCCGTGGTCG ACGCGATCGC CTACAGCTTT GCTGACGCGC AGGCGGTTCT GGGCGAGGCC
GGGGTGCGGG CCGCGTCGCC CCTGGCCATC GGCGGCGGGG CGCGCAGCGA CCTGGTGCTG
CAGACGCTGG CGGATGTGCT GGAGGTGCCG GTGCAGCGCC CGGCCAGCGC GGATCTGGGC
CCGGCGCTCG GGGCGGCGAA GCTGGCGGCG GTGGGCAGCG GGGCGATGCC TGCGGCGCGG
CTGGCCGACC CGCCGGAGAT CGGGGCGGTG TTCCACCCGC GCCCCTCCGC GCGTCACGGC
GCGCGGCTGG CGCGGTACCG GGCGCTTTAC TCCGAGCTCA GGGGGGTCTG CGCGCGCCCG
TAG
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| Protein sequence | MFLGLDIGTS AVKGLVWDGA RVLGAASAPL KVQVPVPGAS EQDPEAWWRG ILAVCAELSA
QPGWAEVSAI GLSGQMHGAV CLGPDGAVLR PAILWNDNRA VREAAEMAAL PGLAARVGVP
PMPGFPAPKL AWLARTEPEL HAATTMVMQA KDWVGMRLHG RAVTEYSEAA GTLWLDQAAR
DWDREALAFS GLERAQMPAL GAGTDLAGPL SAAAAAALGL KPGVPVIRGG GDAMVGAAGI
GVVAPGQAMI SLGTSGQYLV ASEAHRPNPA GLVHSFAHCV PGAYIQMAAM LNGAAPMAWL
AGVLGRSVPD LLAAAETADP AHVPLFLPYL TGERTPHGDP EARAGFEGLS HGSGPGEMMR
AVVDAIAYSF ADAQAVLGEA GVRAASPLAI GGGARSDLVL QTLADVLEVP VQRPASADLG
PALGAAKLAA VGSGAMPAAR LADPPEIGAV FHPRPSARHG ARLARYRALY SELRGVCARP
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