| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1233 |
|---|
| Symbol | pntA |
|---|
| ID | 5711791 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | + |
|---|
| Start bp | 1276126 |
|---|
| End bp | 1277742 |
|---|
| Gene Length | 1617 bp |
|---|
| Protein Length | 538 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 641267145 |
|---|
| Product | NAD(P) transhydrogenase subunit alpha |
|---|
| Protein accession | YP_001532576 |
|---|
| Protein GI | 159043782 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG3288] NAD/NADP transhydrogenase alpha subunit |
|---|
| TIGRFAM ID | [TIGR00561] NAD(P) transhydrogenase, alpha subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 0.111376 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGAACACTG GGCCCGGCTG GGCTGATAAG GGGAAAGGAT ATTACGTGAA GATCGGGGCA
CCGAAAGAAA TCTTCCCTGG CGAGAACCGC GTTGCGATGA CGCCGGACTC TGCGGTTCAG
CTGCAGAAGC TTGGATACGA ATGTGTGATC GAGACCGGCG CCGGTGCGGC GGCCGGGTTC
TCGGACGAGG CGTACACCGC CCAGGGCGTG ACCATCGCCA AGACCGGGGC GGCCTTGTTC
AAGGAGGTGG ACATCGTTGC CAAGGTGCGC CCGCCCTCGG AGGCCGAGGC CAAGCGTCTG
CGCAAGGGGC AGTTGCTGAT CAGCTTCTTC TATCCGGCGG CCAATGAGGC GCTGATGGAG
CTGGCCAAGG ACAAGGGCGC ATCGGTCATC GCCATGGACA TGGTGCCGCG GATCTCGCGC
GCGCAGAAGA TGGATGCGCT GTCCTCGATG GCGAACATCG CGGGCTACCG GGCCGTGATC
GAGGCGGGCA ACAATTTCGG ACGGTTCTTC ACGGGCCAGA TCACCGCCGC CGGCAAGGTG
CCCCCGGCCA AGGTGCTGGT CGTCGGTGCC GGTGTCGCGG GTCTGGCCGC GATCGGGACC
TCGACGTCCC TCGGTGCGAT CACCTACGCC TTCGACGTGC GGCCCGAAGT GGCCGAGCAG
GTCGAATCGA TGGGGGCGGA GTTCGTCTTC CTCGATTTCG AGGAAGAGCA GCAGGACGGG
GCCGCCACGG GCGGCTATGC CTCCGTCTCC AGCCCGGAAT TCGCCGCGGC ACAGCTCGCC
AAGTTCCGCG AGCTTGCGCC GGACATGGAT ATCGTGATCA CCACCGCGCT GATCCCGAAC
CGCGAGGCGC CGGAGCTGTG GACCAAGGAC ATGGTCGAGG CGATGAAGCC CGGCTCGGTC
ATCGTGGATC TCGCCGCCGA ACGCGGCGGC AACTGCAAGC TGACCGTCAA GGACGAGAAG
ATCGTCACCG ATAACGGCGT GACCATCATC GGCTACACCG ACTTTCCGAG CCGGATGGCC
GCGCAATCCT CGACGCTCTA TGCCACGAAC ATCCGCCATC TGATGACGGA TCTGACCCCC
GAGAAGGACG GTCAGACCAA TCACAACATG GAGGACGACG TGATCCGCGG GGCGACGATC
ACCCATGCGG GCGAGATCAC CTTCCCGCCG CCGCCGCCCA AGGTGGCGGC CATCGCGGCC
AAGCCGAAGG AAAAGGTCAA GGAAAAGACC CCCGAAGAGA TCCGCGCCGA AGAGGTCGCG
GCCTTCAAGG CGCAGACCAA GCAGCAGGTG ATCCTGCTGG GCGTCGGCGC GGCGCTGGTG
CTGAGTGTCG GGCTGATCGC GCCGGCAAGC TTCATGCAGC ATTTCATCGT CTTCATCCTG
TCGGTCTTCA TCGGCTTCCA GGTGATCTGG AACGTGGCGC ATTCGCTGCA CACGCCCCTG
ATGGCGGTGA CCAACGCAAT TTCGTCGATC ATCATTCTCG GCGCGCTCAT CCAGATCGGG
TCCAGCTCGC TGCTGATCAC CGTGCTCGCC GCGGCGGGCA TCTTCATGGC CTCGGTGAAT
ATCTTCGGCG GCTTCCTCGT GACACGGCGC ATGCTCGCCA TGTTCCAGAA ATCCTAA
|
|---|
| Protein sequence | MNTGPGWADK GKGYYVKIGA PKEIFPGENR VAMTPDSAVQ LQKLGYECVI ETGAGAAAGF
SDEAYTAQGV TIAKTGAALF KEVDIVAKVR PPSEAEAKRL RKGQLLISFF YPAANEALME
LAKDKGASVI AMDMVPRISR AQKMDALSSM ANIAGYRAVI EAGNNFGRFF TGQITAAGKV
PPAKVLVVGA GVAGLAAIGT STSLGAITYA FDVRPEVAEQ VESMGAEFVF LDFEEEQQDG
AATGGYASVS SPEFAAAQLA KFRELAPDMD IVITTALIPN REAPELWTKD MVEAMKPGSV
IVDLAAERGG NCKLTVKDEK IVTDNGVTII GYTDFPSRMA AQSSTLYATN IRHLMTDLTP
EKDGQTNHNM EDDVIRGATI THAGEITFPP PPPKVAAIAA KPKEKVKEKT PEEIRAEEVA
AFKAQTKQQV ILLGVGAALV LSVGLIAPAS FMQHFIVFIL SVFIGFQVIW NVAHSLHTPL
MAVTNAISSI IILGALIQIG SSSLLITVLA AAGIFMASVN IFGGFLVTRR MLAMFQKS
|
|---|
| |