Gene Dshi_1214 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDshi_1214 
SymbolcoxE 
ID5711772 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDinoroseobacter shibae DFL 12 
KingdomBacteria 
Replicon accessionNC_009952 
Strand
Start bp1253734 
End bp1254912 
Gene Length1179 bp 
Protein Length392 aa 
Translation table11 
GC content72% 
IMG OID641267126 
ProductVWA containing CoxE family protein 
Protein accessionYP_001532557 
Protein GI159043763 
COG category[R] General function prediction only 
COG ID[COG3552] Protein containing von Willebrand factor type A (vWA) domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones35 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGAGCCGTG CGACCCGCTT TGCCGCCCGC GATGCCGGGC CCGCCGCGCG CATGGCCGGG 
TTCATGGCCC ATCTGCGGTC CCATGGCCTG AGCCTCGGCG TCGGGGCCAC CGAGTTGGGG
ATGGAGGCGC TGGCTTGCGT CGACTGCACC CGCCCGGACA CGGCCCGCGC GGCCCTGCGC
GCAGTCTGCG CGGGCAGCCA GGCCGAAGCC GCGCAGTTCG ACGCCCTCTT CGATGCCTAT
TGGCTCAATG GCGGGCGCGT GCGCACCAGG GCTGTCCCGA GCCCGGCGGT CCCGACGCCC
GAGAACAGCT CGTCCGAGCT GGCCGAGGGC GCCTCTCAGG GCGGGCGCGG ACAGGCCGAA
AGCCCCGATG GGGGCGACGG CGAGGCGGGC GCGGATGGCG AGGGCAAGCT CGTCGCCTAC
GCCGTGGCGA ACCTGATGAA GAAAGACCTG CGCGACGTGG TCTCGGCCGC CGATATCCGC
GCCGCCGAGA AGGTGGCCGA AAGTCTGGGC CGGGCCCTGC GCGACCGCCG CTCCCGCCGC
CGCAAGGCCG CCGCGAAGGG GCAGGGGGTC GACATGCGCC GCACCCTGCG CCGGGCCCTG
GCCACCGGGG GCGAGCCCCT GCGGCTGGCG CGCCGCCACC GCCCCGACCG GCCAGTGAAG
ATCGTGGCAC TTTGCGATGT CTCCGGCTCC ATGACCCTCT ATGCCCGCGT GTTCCTCGCC
TTCCTTGCGG GGCTGATGCG GGCCGATCCG GCCTCGGATG CGTATCTCTT TCACACGCGG
CTCGTGCGCA TCACCCAGGC CCTGCGCGAT GACGACCCGA TCCGGGCGCT CAACCGGCTG
AGCCTGCTTG CGGACGGGTT CGGGGGCGGC TCGAAAATCG GCGCGGCGCT GGAGCAGTTC
GCCGCCACCT ATGCCCGCCG CTTCGTCGAC GGGCGCACGG TGGTGCTGAT CCTGTCGGAT
GGCTACGACA CCGCCGAGGC GGGCGATACC GGGGCGGCCC TGGCCCGGCT GAAAAAACGG
GGGTGCAAGG TGATCTGGCT CAACCCGCTG AAATCATGGA AAGACTACGC ACCGGTGGCG
GGTGCGATGG CGGCGGCGAT GCCCCATCTC GACCTGTTCC ACCCGGCCGC GACCTTGGCG
GATCTCGCCG CACTGGAAAC CGAATTGGGA GGGGTGTGA
 
Protein sequence
MSRATRFAAR DAGPAARMAG FMAHLRSHGL SLGVGATELG MEALACVDCT RPDTARAALR 
AVCAGSQAEA AQFDALFDAY WLNGGRVRTR AVPSPAVPTP ENSSSELAEG ASQGGRGQAE
SPDGGDGEAG ADGEGKLVAY AVANLMKKDL RDVVSAADIR AAEKVAESLG RALRDRRSRR
RKAAAKGQGV DMRRTLRRAL ATGGEPLRLA RRHRPDRPVK IVALCDVSGS MTLYARVFLA
FLAGLMRADP ASDAYLFHTR LVRITQALRD DDPIRALNRL SLLADGFGGG SKIGAALEQF
AATYARRFVD GRTVVLILSD GYDTAEAGDT GAALARLKKR GCKVIWLNPL KSWKDYAPVA
GAMAAAMPHL DLFHPAATLA DLAALETELG GV