Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dshi_1207 |
Symbol | gatB |
ID | 5711765 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dinoroseobacter shibae DFL 12 |
Kingdom | Bacteria |
Replicon accession | NC_009952 |
Strand | - |
Start bp | 1245310 |
End bp | 1246827 |
Gene Length | 1518 bp |
Protein Length | 505 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 641267119 |
Product | aspartyl/glutamyl-tRNA amidotransferase subunit B |
Protein accession | YP_001532550 |
Protein GI | 159043756 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0064] Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog) |
TIGRFAM ID | [TIGR00133] glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, B subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 0.119991 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 34 |
Fosmid unclonability p-value | 0.857751 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTCGACC TCACATACGA GACCCCGAAA CCCAAGGTCA TCGCAGGCGC GCGGGAGGAT TGGGAACTGG TGATCGGGCT TGAGGTGCAC GCCCAGGTCG CCACCAATGC CAAGCTGTTC TCCGGCGCCT CGACCCTGTT CGGGGCGGAG CCGAATTCCA ACGTCGCGTT CGTGGATGCG GGCATGCCGG GGATGCTGCC GGTGATCAAC GAGGAATGCG TCGCGCAAGC GGTCCGCACG GGGCTGGGCC TGAAGGCGGC GATCAATCTG ACCTCGGCCT TCGACCGCAA GAACTATTTC TATCCCGATC TGCCCCAGGG CTACCAGATC AGCCAGCTTT ACCACCCCAT CGTGGGCGAG GGCGAGGTGC TGGTCGAGCT GGGCGATGGT ACGGCGCGCG TGGTGCGGAT CGAGCGCATT CACCTGGAAC AGGACGCGGG CAAGTCGATC CACGACATGG ACCCGCATAT GTCCTTCGTG GACCTGAACC GCACGGGCGT GGCCCTGATG GAGATCGTCT CCCGCCCCGA TATCCGCGGG CCCGAAGAGG CGGCCGCCTA TGTCAGCAAG CTGCGCCAGA TCATGCGCTA TCTCGGCACC TGCGACGGCA ACATGCAAAA CGGCAACCTG CGCGCGGATG TGAACGTGTC GGTCTGCCGC CCCGGGGATT ACGAGAAATA CCAGGCGAGC CAGGATTTCT CACATCTCGG CACGCGCTGC GAGATCAAGA ACATGAACTC CCTCCGGTTC ATCCAGCAAG CCATCGAATA CGAGGCGCGC CGCCAGATCG CGATCATCGA GGACGGCGGC AGCGTGACCC AGGAAACCCG GCTCTACGAT CCGGACAAGG GGGAGACGCG GTCCATGCGC TCCAAGGAAG AAGCGCATGA TTACCGCTAC TTCCCCGACC CCGACCTGCT GCCGCTGGAG ATCGAGCAGG CCTGGGTCGA CGATATCGCC GCCGCCCTGC CCGAGCTGCC CGACGCCAAG AAGGCGCGGT TCATCACCGA GTTCGGCCTG TCGGATTACG ATGCCAGCGT CCTGACCGCC GACACCACTA ATGCCGCCTA TTTCGAGGCC GTGGCGGGGG AGGCAGGCGA TGGCAAGCTC GCGGCGAACT GGGTGATCAA CGAGCTGTTC GGGCGGCTGA AGAAGGAAGA CCACGACATC ACCGAAAGCC CGGTCTCGCC CGCGCAACTC GCCGGGATCA TCAAGCTGAT CAAGGCCGAC GCGATTTCGG GCAAGATCGC CAAGGACCTG TTCGAGATCG TCTATACCGA GGGCGGCGAT CCGGCCGAGA TCGTCGAGGC GCGCGGGATG AAGCAGGTCA CCGATACCGG TGCGATCGAG GCCGCGGTGG ACGAGATCAT CGCCGCCAAT CCCGCCCAGG TCGCCAAGGC GCAGGAAAAT CCCAAGCTCG CCGGTTGGTT CGTGGGCCAG GTGATGAAGG CCACGGGCGG CAAGGCCAAC CCCAAGGCCG TGAACCAGAT CGTCGCCGCC AAGCTGGCGC AGCAGTAA
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Protein sequence | MLDLTYETPK PKVIAGARED WELVIGLEVH AQVATNAKLF SGASTLFGAE PNSNVAFVDA GMPGMLPVIN EECVAQAVRT GLGLKAAINL TSAFDRKNYF YPDLPQGYQI SQLYHPIVGE GEVLVELGDG TARVVRIERI HLEQDAGKSI HDMDPHMSFV DLNRTGVALM EIVSRPDIRG PEEAAAYVSK LRQIMRYLGT CDGNMQNGNL RADVNVSVCR PGDYEKYQAS QDFSHLGTRC EIKNMNSLRF IQQAIEYEAR RQIAIIEDGG SVTQETRLYD PDKGETRSMR SKEEAHDYRY FPDPDLLPLE IEQAWVDDIA AALPELPDAK KARFITEFGL SDYDASVLTA DTTNAAYFEA VAGEAGDGKL AANWVINELF GRLKKEDHDI TESPVSPAQL AGIIKLIKAD AISGKIAKDL FEIVYTEGGD PAEIVEARGM KQVTDTGAIE AAVDEIIAAN PAQVAKAQEN PKLAGWFVGQ VMKATGGKAN PKAVNQIVAA KLAQQ
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